Variant report

Variant	rs17177160
Chromosome Location	chr8:105681495-105681496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:105678819..105681604-chr8:105686103..105688142,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11990136	0.89[EUR][1000 genomes]
rs16871578	0.89[EUR][1000 genomes]
rs16871644	0.94[EUR][1000 genomes]
rs4598225	0.94[EUR][1000 genomes]
rs4734800	0.89[EUR][1000 genomes]
rs4734801	0.86[EUR][1000 genomes]
rs6982776	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105677400-105681800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:105677800-105681800	Weak transcription	Fetal Kidney	kidney
3	chr8:105678200-105681800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:105678400-105681800	Weak transcription	NHLF	lung
5	chr8:105678800-105685200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:105678800-105685200	Weak transcription	NH-A	brain
7	chr8:105679200-105682000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:105679200-105684000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:105679200-105685000	Enhancers	K562	blood
10	chr8:105679200-105690600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:105679400-105681600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:105679600-105682800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr8:105680000-105681800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr8:105680400-105682600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:105680400-105683400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr8:105680400-105683400	Enhancers	Osteobl	bone
17	chr8:105680600-105681800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:105680600-105682000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:105680800-105681600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:105680800-105682600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:105680800-105683200	Enhancers	GM12878-XiMat	blood
22	chr8:105681000-105682800	Enhancers	NHDF-Ad	bronchial
23	chr8:105681000-105683200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr8:105681200-105681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr8:105681200-105682400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr8:105681400-105682000	Enhancers	Muscle Satellite Cultured Cells	--

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