Variant report

Variant	rs16871644
Chromosome Location	chr8:105667084-105667085
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11990136	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871578	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17177160	0.94[EUR][1000 genomes]
rs2959027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2959031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2959032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4598225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734798	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4734800	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734801	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982776	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839612	1.00[ASN][1000 genomes]
rs9650013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2422460	chr8:105573376-105746329	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1032476	chr8:105609904-106030916	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv539710	chr8:105609904-106030916	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105664800-105670600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:105665400-105670600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:105665600-105670000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:105666600-105668000	Enhancers	K562	blood
5	chr8:105666800-105667200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:105666800-105667400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:105666800-105667800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:105666800-105667800	Enhancers	NHLF	lung
9	chr8:105666800-105668000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:105666800-105668000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr8:105666800-105668000	Enhancers	Osteobl	bone
12	chr8:105666800-105668200	Enhancers	HSMM	muscle
13	chr8:105666800-105668200	Enhancers	NHDF-Ad	bronchial
14	chr8:105666800-105668400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:105667000-105667400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr8:105667000-105667600	Enhancers	HSMMtube	muscle
17	chr8:105667000-105667800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr8:105667000-105668200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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