Variant report

Variant	rs4734798
Chromosome Location	chr8:105476171-105476172
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11990136	0.90[ASN][1000 genomes]
rs16871578	0.90[ASN][1000 genomes]
rs16871644	0.90[ASN][1000 genomes]
rs2959027	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2959031	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2959032	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs3793353	1.00[CHB][hapmap]
rs4598225	0.90[ASN][1000 genomes]
rs4734797	0.82[ASN][1000 genomes]
rs4734800	0.90[ASN][1000 genomes]
rs4734801	0.90[ASN][1000 genomes]
rs6982776	0.90[ASN][1000 genomes]
rs7839612	0.90[ASN][1000 genomes]
rs9650013	1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv831417	chr8:105455814-105625608	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105466200-105476200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105469600-105478600	Weak transcription	Pancreas	Pancrea
3	chr8:105473000-105476200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr8:105473400-105478800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:105475200-105477600	Flanking Active TSS	Liver	Liver
6	chr8:105475400-105476400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:105475600-105476600	Enhancers	HepG2	liver
8	chr8:105475600-105476800	Enhancers	Fetal Intestine Small	intestine
9	chr8:105475600-105477000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr8:105475600-105477600	Enhancers	Fetal Intestine Large	intestine
11	chr8:105475800-105476600	Enhancers	Fetal Lung	lung
12	chr8:105476000-105476600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:105476000-105476800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:105476000-105476800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr8:105476000-105477000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr8:105476000-105477000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr8:105476000-105477000	Enhancers	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links