Variant report

Variant	rs17179004
Chromosome Location	chr6:102297190-102297191
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12192251	1.00[LWK][hapmap]
rs12207601	1.00[LWK][hapmap]
rs17062535	1.00[LWK][hapmap]
rs4839801	0.80[GIH][hapmap];0.81[MEX][hapmap]
rs588063	0.82[CEU][hapmap]
rs9404147	1.00[ASW][hapmap];0.80[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.86[MKK][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102293800-102297400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:102293800-102297600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:102294200-102297400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:102294200-102297400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:102294400-102297400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:102296200-102297200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:102296200-102297200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:102296800-102297200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:102296800-102297400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:102297000-102297400	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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