Variant report

Variant	rs12192251
Chromosome Location	chr6:102394185-102394186
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10447454	1.00[CEU][hapmap]
rs10447455	1.00[CEU][hapmap]
rs10457942	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs10457943	1.00[CEU][hapmap]
rs11156164	1.00[CEU][hapmap]
rs11756377	1.00[CEU][hapmap]
rs11757053	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11760003	1.00[CEU][hapmap]
rs12191497	0.91[CEU][hapmap]
rs12197541	0.92[CEU][hapmap]
rs12198230	0.92[CEU][hapmap]
rs12198351	0.83[CEU][hapmap]
rs12198680	0.83[CEU][hapmap]
rs12200730	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs12201321	0.91[CEU][hapmap]
rs12201615	0.83[CEU][hapmap]
rs12202506	0.91[CEU][hapmap]
rs12203827	0.92[CEU][hapmap]
rs12204647	1.00[CEU][hapmap]
rs12205285	1.00[CEU][hapmap]
rs12205848	0.92[CEU][hapmap]
rs12207485	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs12207601	0.92[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs12207879	0.92[CEU][hapmap]
rs12208407	0.92[CEU][hapmap];0.82[AMR][1000 genomes]
rs12212701	1.00[CEU][hapmap]
rs12213927	0.92[CEU][hapmap]
rs12214473	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1340276	0.92[CEU][hapmap]
rs1340277	0.92[CEU][hapmap]
rs1340290	0.92[CEU][hapmap]
rs1475919	0.85[CEU][hapmap]
rs1475920	0.84[CEU][hapmap]
rs1475921	0.85[CEU][hapmap]
rs1578294	0.85[CEU][hapmap]
rs17062535	1.00[LWK][hapmap]
rs17179004	1.00[LWK][hapmap]
rs17784615	0.92[CEU][hapmap]
rs17785058	0.92[CEU][hapmap]
rs1934676	1.00[CEU][hapmap]
rs1934677	0.92[CEU][hapmap]
rs2051446	0.84[CEU][hapmap]
rs2518187	0.85[CEU][hapmap]
rs2518188	0.85[CEU][hapmap]
rs2518207	0.91[CEU][hapmap]
rs2518211	0.85[CEU][hapmap]
rs2518214	0.85[CEU][hapmap]
rs2518273	0.92[CEU][hapmap]
rs2791765	0.84[CEU][hapmap]
rs2791766	0.84[CEU][hapmap]
rs2791767	0.81[CEU][hapmap]
rs2791847	0.92[CEU][hapmap]
rs2791849	0.92[CEU][hapmap]
rs2852625	0.92[CEU][hapmap]
rs9322627	0.91[CEU][hapmap]
rs9404147	1.00[LWK][hapmap]
rs954764	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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