Variant report

Variant	rs11756377
Chromosome Location	chr6:102433765-102433766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102427557..102429881-chr6:102433659..102436642,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10447454	1.00[CEU][hapmap]
rs10447455	1.00[CEU][hapmap]
rs10457942	0.92[CEU][hapmap]
rs10457943	1.00[CEU][hapmap]
rs11156164	1.00[CEU][hapmap]
rs11757053	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11760003	1.00[CEU][hapmap]
rs12191497	0.92[CEU][hapmap]
rs12192251	1.00[CEU][hapmap]
rs12197541	0.92[CEU][hapmap]
rs12198230	0.92[CEU][hapmap]
rs12198351	0.83[CEU][hapmap]
rs12198680	0.84[CEU][hapmap]
rs12200730	0.92[CEU][hapmap]
rs12201321	0.91[CEU][hapmap]
rs12201615	0.84[CEU][hapmap]
rs12202506	0.92[CEU][hapmap]
rs12203827	0.92[CEU][hapmap]
rs12205285	1.00[CEU][hapmap]
rs12205848	0.92[CEU][hapmap]
rs12207485	0.92[CEU][hapmap]
rs12207601	0.92[CEU][hapmap]
rs12207879	0.92[CEU][hapmap]
rs12208407	0.92[CEU][hapmap]
rs12212701	1.00[CEU][hapmap]
rs12213927	0.92[CEU][hapmap]
rs12214473	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1340276	0.86[CEU][hapmap]
rs1340277	0.86[CEU][hapmap]
rs1340290	0.92[CEU][hapmap]
rs1475919	0.85[CEU][hapmap]
rs17784615	0.92[CEU][hapmap]
rs17785058	0.92[CEU][hapmap]
rs1934676	1.00[CEU][hapmap]
rs1934677	0.92[CEU][hapmap]
rs2518207	0.91[CEU][hapmap]
rs2518273	0.92[CEU][hapmap]
rs2791847	0.92[CEU][hapmap]
rs2791849	0.92[CEU][hapmap]
rs2852625	0.92[CEU][hapmap]
rs9322627	0.92[CEU][hapmap]
rs954764	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1033919	chr6:102417713-102474539	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2756012	chr6:102428797-102489159	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv981337	chr6:102430649-102434250	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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