Variant report
| Variant | rs11156164 |
|---|---|
| Chromosome Location | chr6:102411548-102411549 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:102408799..102411775-chr6:102415336..102416958,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10447454 | 1.00[CEU][hapmap] |
| rs10447455 | 1.00[CEU][hapmap] |
| rs10457942 | 0.92[CEU][hapmap] |
| rs10457943 | 1.00[CEU][hapmap] |
| rs11756377 | 1.00[CEU][hapmap] |
| rs11757053 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs11760003 | 1.00[CEU][hapmap] |
| rs12191497 | 0.92[CEU][hapmap] |
| rs12192251 | 1.00[CEU][hapmap] |
| rs12197541 | 0.92[CEU][hapmap] |
| rs12198230 | 0.92[CEU][hapmap] |
| rs12198351 | 0.83[CEU][hapmap] |
| rs12198680 | 0.84[CEU][hapmap] |
| rs12200730 | 0.92[CEU][hapmap] |
| rs12201321 | 0.91[CEU][hapmap] |
| rs12201615 | 0.84[CEU][hapmap] |
| rs12202506 | 0.92[CEU][hapmap] |
| rs12203827 | 0.92[CEU][hapmap] |
| rs12205285 | 1.00[CEU][hapmap] |
| rs12205848 | 0.92[CEU][hapmap] |
| rs12207485 | 0.92[CEU][hapmap] |
| rs12207601 | 0.92[CEU][hapmap] |
| rs12207879 | 0.92[CEU][hapmap] |
| rs12208407 | 0.92[CEU][hapmap] |
| rs12212701 | 1.00[CEU][hapmap] |
| rs12213927 | 0.92[CEU][hapmap] |
| rs12214473 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1340276 | 0.86[CEU][hapmap] |
| rs1340277 | 0.86[CEU][hapmap] |
| rs1340290 | 0.92[CEU][hapmap] |
| rs1475919 | 0.85[CEU][hapmap] |
| rs17784615 | 0.92[CEU][hapmap] |
| rs17785058 | 0.92[CEU][hapmap] |
| rs1934676 | 1.00[CEU][hapmap] |
| rs1934677 | 0.92[CEU][hapmap] |
| rs2518207 | 0.91[CEU][hapmap] |
| rs2518273 | 0.92[CEU][hapmap] |
| rs2791847 | 0.92[CEU][hapmap] |
| rs2791849 | 0.92[CEU][hapmap] |
| rs2852625 | 0.92[CEU][hapmap] |
| rs9322627 | 0.92[CEU][hapmap] |
| rs954764 | 0.83[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
