Variant report

Variant	rs12208407
Chromosome Location	chr6:102360012-102360013
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102353130..102355186-chr6:102359232..102361862,2	K562	blood:
2	chr6:102352732..102355186-chr6:102357901..102361862,3	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10447454	0.92[CEU][hapmap]
rs10447455	0.92[CEU][hapmap]
rs10457942	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10457943	0.92[CEU][hapmap]
rs11156164	0.92[CEU][hapmap]
rs11756377	0.92[CEU][hapmap]
rs11760003	0.92[CEU][hapmap]
rs12191497	1.00[CEU][hapmap]
rs12192251	0.92[CEU][hapmap]
rs12197541	1.00[CEU][hapmap]
rs12198230	1.00[CEU][hapmap]
rs12200730	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12201321	1.00[CEU][hapmap]
rs12202506	1.00[CEU][hapmap]
rs12203827	1.00[CEU][hapmap]
rs12205285	0.92[CEU][hapmap]
rs12205848	1.00[CEU][hapmap]
rs12207485	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12207601	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12207879	1.00[CEU][hapmap]
rs12212701	0.92[CEU][hapmap]
rs12213927	1.00[CEU][hapmap]
rs1340290	1.00[CEU][hapmap]
rs1475919	0.92[CEU][hapmap]
rs1475920	0.86[CEU][hapmap]
rs1475921	0.86[CEU][hapmap]
rs1578294	0.86[CEU][hapmap]
rs17784615	1.00[CEU][hapmap]
rs17785058	1.00[CEU][hapmap]
rs1934676	1.00[CEU][hapmap]
rs1934677	1.00[CEU][hapmap]
rs2051446	0.86[CEU][hapmap]
rs2518187	0.86[CEU][hapmap]
rs2518188	0.86[CEU][hapmap]
rs2518207	1.00[CEU][hapmap]
rs2518211	0.86[CEU][hapmap]
rs2518214	0.86[CEU][hapmap]
rs2518273	1.00[CEU][hapmap]
rs2791765	0.86[CEU][hapmap]
rs2791766	0.86[CEU][hapmap]
rs2791767	0.84[CEU][hapmap]
rs2791847	1.00[CEU][hapmap]
rs2791849	1.00[CEU][hapmap]
rs2852625	1.00[CEU][hapmap]
rs7752038	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9322627	0.84[CEU][hapmap]
rs9404156	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102358800-102360800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:102360000-102360600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain

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