Variant report

Variant	rs7752038
Chromosome Location	chr6:102346746-102346747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10457942	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12191497	0.85[CEU][hapmap]
rs12197541	0.85[CEU][hapmap]
rs12198230	0.85[CEU][hapmap]
rs12200730	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12201321	0.84[CEU][hapmap]
rs12202506	0.85[CEU][hapmap]
rs12203827	0.85[CEU][hapmap]
rs12205848	0.85[CEU][hapmap]
rs12207485	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12207601	0.85[CEU][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12207879	0.85[CEU][hapmap]
rs12208407	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12213927	0.85[CEU][hapmap]
rs1340290	0.85[CEU][hapmap]
rs17784615	0.85[CEU][hapmap]
rs17785058	0.85[CEU][hapmap]
rs1934676	0.83[CEU][hapmap]
rs1934677	0.85[CEU][hapmap]
rs2518207	0.84[CEU][hapmap]
rs2518273	0.85[CEU][hapmap]
rs2791767	0.91[CEU][hapmap]
rs2791847	0.85[CEU][hapmap]
rs2791849	0.85[CEU][hapmap]
rs2852625	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604319	chr6:102307069-102355867	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604320	chr6:102310726-102350747	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102345600-102346800	Enhancers	HUES48 Cell Line	embryonic stem cell

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