Variant report

Variant	rs1340277
Chromosome Location	chr6:102383610-102383611
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10447454	0.86[CEU][hapmap]
rs10447455	0.85[CEU][hapmap]
rs10457943	0.85[CEU][hapmap]
rs11156164	0.86[CEU][hapmap]
rs11756377	0.86[CEU][hapmap]
rs11760003	0.86[CEU][hapmap]
rs12192251	0.92[CEU][hapmap]
rs12205285	0.86[CEU][hapmap]
rs12207601	0.84[CEU][hapmap]
rs12212701	0.86[CEU][hapmap]
rs1340276	1.00[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1340288	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs1413970	0.92[YRI][hapmap]
rs1475919	0.92[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes]
rs1475920	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes]
rs1475921	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1475922	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1475923	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1475924	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1475925	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1578291	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1578294	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs1934676	0.84[CEU][hapmap]
rs1967944	0.85[AMR][1000 genomes]
rs2051446	0.93[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2051449	0.86[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2246086	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2518186	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2518187	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2518188	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2518189	0.87[AMR][1000 genomes]
rs2518211	0.93[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap]
rs2518214	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2518274	0.87[AMR][1000 genomes]
rs2518276	0.87[AMR][1000 genomes]
rs2791762	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2791763	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2791765	0.93[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs2791766	0.93[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2791767	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap]
rs2791774	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2791790	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2791791	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs2791801	0.85[CEU][hapmap]
rs2791802	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5021084	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs7772343	0.91[CHB][hapmap];0.85[JPT][hapmap]
rs9404156	0.85[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102380200-102385000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:102383200-102385800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:102383600-102384000	Enhancers	Liver	Liver

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