Variant report
Variant | rs2791801 |
---|---|
Chromosome Location | chr6:102376061-102376062 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10447454 | 0.85[CEU][hapmap] |
rs1340276 | 0.85[CEU][hapmap];0.81[CHB][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1340277 | 0.85[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1340288 | 0.82[CHB][hapmap] |
rs1413970 | 0.82[GIH][hapmap] |
rs1475919 | 0.82[CHB][hapmap];0.83[GIH][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes] |
rs1475920 | 0.82[CHB][hapmap];0.89[AMR][1000 genomes] |
rs1475921 | 0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs1475922 | 0.82[CHB][hapmap] |
rs1475923 | 0.82[CHB][hapmap] |
rs1475924 | 0.82[CHB][hapmap] |
rs1475925 | 0.82[CHB][hapmap] |
rs1578291 | 0.82[CHB][hapmap];0.92[TSI][hapmap] |
rs1578294 | 0.82[CHB][hapmap] |
rs1967944 | 0.89[AMR][1000 genomes] |
rs2051446 | 0.81[CHB][hapmap] |
rs2051449 | 0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2246086 | 0.82[CHB][hapmap];0.83[YRI][hapmap] |
rs2248800 | 0.83[CHD][hapmap] |
rs2518186 | 0.82[CHB][hapmap] |
rs2518187 | 0.82[CHB][hapmap] |
rs2518188 | 0.82[CHB][hapmap] |
rs2518189 | 0.91[AMR][1000 genomes] |
rs2518211 | 0.82[CHB][hapmap] |
rs2518214 | 0.82[CHB][hapmap] |
rs2518274 | 0.91[AMR][1000 genomes] |
rs2518276 | 0.91[AMR][1000 genomes] |
rs2791762 | 0.82[CHB][hapmap] |
rs2791763 | 0.82[CHB][hapmap] |
rs2791765 | 0.81[CHB][hapmap] |
rs2791766 | 0.82[CHB][hapmap] |
rs2791774 | 0.91[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs2791790 | 0.82[CHB][hapmap];0.83[YRI][hapmap] |
rs2791791 | 0.82[CHB][hapmap];0.83[YRI][hapmap] |
rs2791802 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2852605 | 0.84[CHD][hapmap] |
rs5021084 | 0.89[CHB][hapmap] |
rs6570999 | 1.00[ASW][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap] |
rs7772343 | 0.82[CHB][hapmap] |
rs9404156 | 0.82[CHB][hapmap];0.83[GIH][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv830743 | chr6:102284082-102459192 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | nsv886465 | chr6:102318339-102466397 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | nsv886466 | chr6:102327303-102432398 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
5 | nsv470850 | chr6:102343078-102595587 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
6 | nsv830744 | chr6:102369761-102566737 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
No data |