Variant report

Variant	rs6570999
Chromosome Location	chr6:102399335-102399336
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12201018	1.00[JPT][hapmap]
rs1413970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1475919	0.88[GIH][hapmap];0.89[MEX][hapmap]
rs1578291	0.81[TSI][hapmap]
rs2243666	1.00[JPT][hapmap]
rs2246086	0.94[YRI][hapmap]
rs2248800	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs2518287	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2791767	0.84[CHB][hapmap]
rs2791790	0.94[YRI][hapmap]
rs2791791	0.94[YRI][hapmap]
rs2791801	1.00[ASW][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.92[LWK][hapmap];0.98[MKK][hapmap];0.89[YRI][hapmap]
rs2791802	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2852605	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs3213607	0.90[CHD][hapmap];1.00[JPT][hapmap]
rs9404156	0.88[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6570999	DNAJC1	trans	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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