Variant report

Variant	rs1578291
Chromosome Location	chr6:102389678-102389679
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:102388911..102391649-chr6:102394397..102396742,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1340276	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1340277	0.87[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1340288	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1413970	0.83[TSI][hapmap]
rs1475919	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs1475920	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs1475921	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs1475922	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475923	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475924	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1475925	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1578294	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1967944	0.83[AMR][1000 genomes]
rs2051446	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2051449	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2246086	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518186	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518187	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518188	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518189	0.85[AMR][1000 genomes]
rs2518211	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518214	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2518274	0.85[AMR][1000 genomes]
rs2518276	0.85[AMR][1000 genomes]
rs2791762	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791763	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791765	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791766	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791767	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791774	0.85[AMR][1000 genomes]
rs2791790	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791791	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2791801	0.82[CHB][hapmap];0.92[TSI][hapmap]
rs2791802	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs5021084	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6570999	0.81[TSI][hapmap]
rs7772343	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9404156	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9498740	0.82[JPT][hapmap];0.83[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv470850	chr6:102343078-102595587	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv830744	chr6:102369761-102566737	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links