Variant report

Variant	rs9498740
Chromosome Location	chr6:102341430-102341431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10457942	0.81[AMR][1000 genomes]
rs12200730	0.81[AMR][1000 genomes]
rs12207485	0.81[AMR][1000 genomes]
rs12207601	0.81[AMR][1000 genomes]
rs12208407	0.81[AMR][1000 genomes]
rs1340288	0.82[JPT][hapmap]
rs1475919	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1475920	0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs1475921	0.82[JPT][hapmap];0.82[EUR][1000 genomes]
rs1475922	0.82[JPT][hapmap]
rs1475923	0.82[JPT][hapmap]
rs1475924	0.82[JPT][hapmap]
rs1475925	0.82[JPT][hapmap]
rs1578291	0.82[JPT][hapmap];0.83[MKK][hapmap]
rs1578294	0.82[JPT][hapmap]
rs1967944	0.83[EUR][1000 genomes]
rs2051446	0.82[JPT][hapmap]
rs2051449	0.82[JPT][hapmap]
rs2246086	0.82[JPT][hapmap]
rs2518186	0.82[JPT][hapmap]
rs2518187	0.82[JPT][hapmap]
rs2518188	0.82[JPT][hapmap]
rs2518189	0.81[EUR][1000 genomes]
rs2518211	0.82[JPT][hapmap]
rs2518214	0.82[JPT][hapmap]
rs2518274	0.81[EUR][1000 genomes]
rs2518276	0.81[EUR][1000 genomes]
rs2791762	0.82[JPT][hapmap]
rs2791763	0.82[JPT][hapmap]
rs2791765	0.82[JPT][hapmap]
rs2791766	0.82[JPT][hapmap]
rs2791774	0.83[EUR][1000 genomes]
rs2791790	0.82[JPT][hapmap]
rs2791791	0.82[JPT][hapmap]
rs5021084	0.82[JPT][hapmap]
rs7772343	0.82[JPT][hapmap]
rs9404156	0.82[JPT][hapmap];0.87[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv463994	chr6:102303080-102346746	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv604318	chr6:102303080-102346746	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv604319	chr6:102307069-102355867	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv604320	chr6:102310726-102350747	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv886465	chr6:102318339-102466397	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886466	chr6:102327303-102432398	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3329423	chr6:102339059-102343057	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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