Variant report

Variant	rs17179984
Chromosome Location	chr14:65159342-65159343
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64969883..64973217-chr14:65158643..65161451,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17179970	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17180090	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17767188	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17767206	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1985465	1.00[JPT][hapmap]
rs1985466	0.83[ASN][1000 genomes]
rs1998120	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs229620	0.83[ASN][1000 genomes]
rs229624	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs229625	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs229626	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs229644	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs229646	1.00[JPT][hapmap]
rs229650	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs229651	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs229655	0.83[ASN][1000 genomes]
rs229660	1.00[JPT][hapmap]
rs229662	0.95[ASN][1000 genomes]
rs229663	0.95[ASN][1000 genomes]
rs229664	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs41301473	0.95[ASN][1000 genomes]
rs41307086	0.91[ASN][1000 genomes]
rs58789159	0.95[ASN][1000 genomes]
rs73273513	0.83[ASN][1000 genomes]
rs73273517	0.87[ASN][1000 genomes]
rs73273524	0.95[ASN][1000 genomes]
rs73273534	0.95[ASN][1000 genomes]
rs73273536	0.95[ASN][1000 genomes]
rs73273546	0.87[ASN][1000 genomes]
rs73273549	0.95[ASN][1000 genomes]
rs754435	0.95[ASN][1000 genomes]
rs872296	0.92[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65149400-65169400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65151200-65159600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:65153000-65160200	Weak transcription	Placenta	Placenta
4	chr14:65155400-65160800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:65155600-65165200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:65155800-65163000	Weak transcription	Lung	lung
7	chr14:65156000-65159600	Weak transcription	Primary B cells from cord blood	blood
8	chr14:65156000-65160400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr14:65156000-65163000	Weak transcription	Pancreas	Pancrea
10	chr14:65156000-65165000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:65156000-65165200	Weak transcription	Fetal Thymus	thymus
12	chr14:65156400-65160600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:65156600-65162800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr14:65156800-65161400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:65156800-65162000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:65156800-65162800	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:65156800-65162800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr14:65156800-65163000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr14:65157800-65161400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:65158800-65160000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:65158800-65160000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr14:65158800-65160000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:65158800-65160000	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr14:65158800-65160000	Enhancers	HMEC	breast
25	chr14:65158800-65160200	Enhancers	NHEK	skin
26	chr14:65158800-65164600	Enhancers	Primary neutrophils fromperipheralblood	blood
27	chr14:65159000-65159400	Enhancers	Esophagus	oesophagus
28	chr14:65159000-65159600	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:65159000-65159600	Enhancers	Colonic Mucosa	Colon
30	chr14:65159000-65159600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr14:65159000-65159600	Enhancers	Gastric	stomach
32	chr14:65159000-65159800	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr14:65159000-65160000	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr14:65159000-65160600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr14:65159000-65160800	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr14:65159000-65161000	Enhancers	Right Ventricle	heart
37	chr14:65159000-65161000	Enhancers	Spleen	Spleen
38	chr14:65159000-65161600	Enhancers	Fetal Muscle Leg	muscle
39	chr14:65159000-65161600	Enhancers	Left Ventricle	heart
40	chr14:65159000-65161800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:65159000-65161800	Enhancers	Right Atrium	heart
42	chr14:65159000-65162000	Enhancers	Brain Angular Gyrus	brain
43	chr14:65159000-65162000	Enhancers	Brain Anterior Caudate	brain
44	chr14:65159000-65162000	Enhancers	Brain Cingulate Gyrus	brain
45	chr14:65159000-65162000	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr14:65159000-65162400	Enhancers	Brain Substantia Nigra	brain
47	chr14:65159000-65166000	Enhancers	Brain Hippocampus Middle	brain
48	chr14:65159200-65159400	Enhancers	Fetal Intestine Small	intestine
49	chr14:65159200-65159800	Enhancers	Stomach Mucosa	stomach
50	chr14:65159200-65161800	Enhancers	Cortex derived primary cultured neurospheres	brain

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