Variant report

Variant	rs17185158
Chromosome Location	chr14:25276449-25276450
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1241649	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12893031	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3783445	0.93[ASN][1000 genomes]
rs7156092	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161311	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs854320	0.90[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1035284	chr14:25267840-25285191	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv542003	chr14:25267840-25285191	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv525203	chr14:25270335-25282967	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25272400-25283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:25273200-25276800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:25273400-25277600	Enhancers	Fetal Intestine Small	intestine
4	chr14:25273400-25277600	Weak transcription	Pancreas	Pancrea
5	chr14:25273400-25278200	Enhancers	Fetal Intestine Large	intestine
6	chr14:25274000-25283000	Weak transcription	Gastric	stomach
7	chr14:25275000-25276600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr14:25275000-25279400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:25275200-25276600	Enhancers	Fetal Heart	heart
10	chr14:25275200-25276600	Enhancers	Right Atrium	heart
11	chr14:25275200-25285000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:25275400-25276600	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:25275400-25276600	Enhancers	Left Ventricle	heart
14	chr14:25275400-25277200	Enhancers	Liver	Liver
15	chr14:25275400-25278200	Weak transcription	HSMMtube	muscle
16	chr14:25275400-25278400	Enhancers	Right Ventricle	heart
17	chr14:25275400-25285000	Weak transcription	Lung	lung
18	chr14:25275600-25279400	Weak transcription	Fetal Muscle Leg	muscle
19	chr14:25275600-25279600	Weak transcription	Brain Hippocampus Middle	brain
20	chr14:25275800-25279200	Weak transcription	Fetal Kidney	kidney
21	chr14:25276000-25278200	Weak transcription	Stomach Mucosa	stomach
22	chr14:25276000-25279400	Weak transcription	Brain Substantia Nigra	brain
23	chr14:25276000-25279400	Weak transcription	Small Intestine	intestine
24	chr14:25276000-25280800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr14:25276000-25281400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:25276200-25277200	Weak transcription	Fetal Lung	lung
27	chr14:25276200-25277800	Weak transcription	HepG2	liver
28	chr14:25276200-25278400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:25276200-25279600	Weak transcription	Brain Anterior Caudate	brain
30	chr14:25276200-25279600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr14:25276200-25282000	Weak transcription	Fetal Brain Female	brain
32	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
33	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon

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