Variant report

Variant	rs3783445
Chromosome Location	chr14:25285322-25285323
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1241649	0.94[ASN][1000 genomes]
rs12880667	0.81[EUR][1000 genomes]
rs12888023	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12893031	0.92[ASN][1000 genomes]
rs17185158	0.93[ASN][1000 genomes]
rs7156092	0.93[ASN][1000 genomes]
rs7161311	0.93[ASN][1000 genomes]
rs854320	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv456169	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv564071	chr14:25270335-25288227	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25276200-25285400	Weak transcription	Adipose Nuclei	Adipose
2	chr14:25276200-25286600	Weak transcription	Colon Smooth Muscle	Colon
3	chr14:25277800-25286600	Weak transcription	Placenta	Placenta
4	chr14:25278000-25286400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:25278600-25287600	Enhancers	Fetal Intestine Large	intestine
6	chr14:25279800-25285600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:25279800-25286400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:25279800-25286800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:25279800-25287400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:25280000-25285400	Weak transcription	Brain Angular Gyrus	brain
11	chr14:25280000-25285400	Weak transcription	HSMMtube	muscle
12	chr14:25280000-25285600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:25280000-25285600	Weak transcription	Brain Hippocampus Middle	brain
14	chr14:25280000-25286200	Weak transcription	Brain Substantia Nigra	brain
15	chr14:25280600-25286400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:25280600-25286600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:25280800-25285800	Weak transcription	Brain Anterior Caudate	brain
18	chr14:25280800-25289200	Weak transcription	Fetal Stomach	stomach
19	chr14:25281800-25287400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr14:25282800-25285600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr14:25283000-25288600	Enhancers	Left Ventricle	heart
22	chr14:25283200-25285600	Enhancers	Right Ventricle	heart
23	chr14:25283400-25285600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr14:25283600-25285800	Enhancers	Liver	Liver
25	chr14:25283800-25285600	Genic enhancers	Fetal Intestine Small	intestine
26	chr14:25283800-25287400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr14:25284200-25285600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:25284600-25286200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr14:25284600-25288000	Enhancers	Stomach Mucosa	stomach
30	chr14:25284600-25289200	Enhancers	Pancreas	Pancrea
31	chr14:25284800-25285400	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:25284800-25285600	Enhancers	Colonic Mucosa	Colon
33	chr14:25284800-25285600	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr14:25284800-25285600	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:25284800-25285800	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr14:25284800-25286000	Enhancers	Fetal Kidney	kidney
37	chr14:25284800-25286000	Enhancers	Gastric	stomach
38	chr14:25284800-25286400	Genic enhancers	Fetal Muscle Leg	muscle
39	chr14:25284800-25287400	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr14:25284800-25288400	Enhancers	Right Atrium	heart
41	chr14:25284800-25288600	Genic enhancers	Fetal Lung	lung
42	chr14:25284800-25288800	Strong transcription	Placenta Amnion	Placenta Amnion
43	chr14:25285000-25285600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:25285000-25286000	Enhancers	Esophagus	oesophagus
45	chr14:25285000-25288000	Enhancers	Lung	lung
46	chr14:25285000-25288400	Flanking Active TSS	HepG2	liver
47	chr14:25285200-25285800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:25285200-25285800	Enhancers	NHEK	skin
49	chr14:25285200-25286000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr14:25285200-25286000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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