Variant report
| Variant | rs17185850 |
|---|---|
| Chromosome Location | chr4:125929109-125929110 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10005624 | 0.81[EUR][1000 genomes] |
| rs1391395 | 0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1498046 | 0.81[EUR][1000 genomes] |
| rs1498047 | 0.81[EUR][1000 genomes] |
| rs17185668 | 1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2201824 | 0.87[EUR][1000 genomes] |
| rs2390768 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2390769 | 0.81[EUR][1000 genomes] |
| rs4834011 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs5008486 | 0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56189956 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs56266847 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6821971 | 0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];0.93[JPT][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6851045 | 0.82[ASN][1000 genomes] |
| rs72687629 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72687635 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72687657 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72687662 | 0.84[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72687666 | 0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72687670 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125928400-125932200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
