Variant report

Variant	rs2390768
Chromosome Location	chr4:125933727-125933728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1391395	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1498046	0.83[EUR][1000 genomes]
rs1498047	0.83[EUR][1000 genomes]
rs17185668	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17185850	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2201824	0.86[EUR][1000 genomes]
rs4834011	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5008486	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56189956	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56266847	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6821971	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6851045	0.82[ASN][1000 genomes]
rs72687629	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72687635	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72687657	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72687662	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72687666	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72687670	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125932800-125935000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr4:125932800-125939800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:125932800-125940200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:125933000-125935000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr4:125933000-125939600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:125933000-125939800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr4:125933000-125949400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:125933200-125937400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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