Variant report

Variant	rs17186961
Chromosome Location	chr8:103630028-103630029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103627950..103630144-chr8:103642209..103643784,2	MCF-7	breast:
2	chr8:103628414..103630902-chr8:103665776..103668447,2	MCF-7	breast:
3	chr8:103627646..103630769-chr8:103644453..103646931,3	MCF-7	breast:
4	chr8:103622570..103626040-chr8:103626583..103631374,6	MCF-7	breast:
5	chr8:103424239..103426883-chr8:103628638..103630837,2	MCF-7	breast:
6	chr8:103628443..103630638-chr8:103668451..103670102,2	MCF-7	breast:
7	chr8:103623532..103635312-chr8:103817499..103824242,24	MCF-7	breast:
8	chr8:103628534..103630201-chr8:103632702..103634900,2	MCF-7	breast:
9	chr8:103622538..103626629-chr8:103626817..103631339,6	K562	blood:
10	chr8:103622636..103626514-chr8:103628433..103631339,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
ENSG00000253382	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000104517	Chromatin interaction
ENSG00000253669	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12543008	0.82[EUR][1000 genomes]
rs12543046	1.00[CEU][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs16869658	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.94[MKK][hapmap];0.80[YRI][hapmap];0.88[ASN][1000 genomes]
rs2511679	0.80[MEX][hapmap]
rs4734648	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs6468836	1.00[CEU][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes]
rs6468838	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6981007	1.00[CEU][hapmap];0.90[JPT][hapmap]
rs6998277	0.83[CHD][hapmap]
rs7017839	1.00[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs965661	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103623800-103630400	Enhancers	Primary B cells from cord blood	blood
3	chr8:103626200-103630600	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:103627800-103631200	Enhancers	Placenta	Placenta
5	chr8:103628000-103631200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:103628400-103630200	Enhancers	Colon Smooth Muscle	Colon
7	chr8:103628600-103630200	Enhancers	HSMMtube	muscle
8	chr8:103629000-103634000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:103629600-103630400	Enhancers	GM12878-XiMat	blood
10	chr8:103629600-103630400	Enhancers	K562	blood
11	chr8:103629800-103630200	Flanking Active TSS	Hela-S3	cervix
12	chr8:103629800-103630200	Enhancers	NHLF	lung
13	chr8:103629800-103630400	Enhancers	Gastric	stomach
14	chr8:103630000-103630200	Enhancers	Rectal Smooth Muscle	rectum
15	chr8:103630000-103630200	Enhancers	A549	lung
16	chr8:103630000-103630400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
17	chr8:103630000-103630400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr8:103630000-103630400	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr8:103630000-103633800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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