Variant report

Variant	rs4734648
Chromosome Location	chr8:103635994-103635995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12543046	0.81[JPT][hapmap]
rs1550005	0.81[JPT][hapmap]
rs16869658	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17186961	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.87[MKK][hapmap];0.92[YRI][hapmap];0.85[ASN][1000 genomes]
rs2099408	0.81[JPT][hapmap]
rs2436940	0.81[JPT][hapmap]
rs3191333	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs34217554	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35155104	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4281092	1.00[CEU][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs4734652	0.80[EUR][1000 genomes]
rs4734654	0.81[CHD][hapmap];0.90[JPT][hapmap]
rs62523306	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62523309	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6468836	0.81[JPT][hapmap]
rs6981007	0.81[JPT][hapmap]
rs6998277	1.00[CEU][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7017839	0.91[CHB][hapmap]
rs965661	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103634200-103639600	Weak transcription	Fetal Muscle Leg	muscle
3	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
4	chr8:103635400-103636000	Weak transcription	Placenta	Placenta
5	chr8:103635600-103639600	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr8:103635800-103636200	Enhancers	GM12878-XiMat	blood
7	chr8:103635800-103639400	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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