Variant report

Variant	rs62523309
Chromosome Location	chr8:103645751-103645752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13275089	0.82[ASN][1000 genomes]
rs16869658	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3191333	0.82[ASN][1000 genomes]
rs34217554	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35155104	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4281092	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734648	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4734652	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62523306	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6998277	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7013496	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103622800-103646400	Weak transcription	Psoas Muscle	Psoas
2	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
3	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:103640600-103646400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
6	chr8:103644600-103647000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr8:103644800-103650000	Enhancers	Placenta	Placenta
8	chr8:103644800-103659600	Weak transcription	Spleen	Spleen
9	chr8:103645000-103646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr8:103645000-103646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr8:103645000-103647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:103645200-103646000	Enhancers	Hela-S3	cervix
13	chr8:103645200-103646200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr8:103645200-103646400	Weak transcription	K562	blood
15	chr8:103645200-103646600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr8:103645600-103660000	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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