Variant report

Variant	rs35155104
Chromosome Location	chr8:103646559-103646560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103638730..103642072-chr8:103644705..103647673,4	MCF-7	breast:
2	chr8:103643403..103646605-chr8:103821191..103823533,3	MCF-7	breast:
3	chr8:103644446..103678119-chr8:103815618..103829807,419	MCF-7	breast:
4	chr8:103645308..103647554-chr8:103667031..103668861,3	K562	blood:
5	chr8:103646169..103646881-chr8:103826904..103827439,2	MCF-7	breast:
6	chr8:103612606..103614596-chr8:103644963..103646677,2	MCF-7	breast:
7	chr8:103645767..103647701-chr8:103650760..103653199,2	MCF-7	breast:
8	chr8:103627646..103630769-chr8:103644453..103646931,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253669	Chromatin interaction
ENSG00000155090	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13275089	0.83[ASN][1000 genomes]
rs1434281	0.81[ASN][1000 genomes]
rs16869658	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3191333	0.83[ASN][1000 genomes]
rs34217554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4281092	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734648	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4734652	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62523306	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62523309	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6998277	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7013496	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1028329	chr8:103574775-103684362	Strong transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103635000-103646600	Weak transcription	Right Atrium	heart
2	chr8:103640000-103646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:103640800-103646600	Weak transcription	Fetal Stomach	stomach
4	chr8:103644600-103647000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:103644800-103650000	Enhancers	Placenta	Placenta
6	chr8:103644800-103659600	Weak transcription	Spleen	Spleen
7	chr8:103645000-103646600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:103645000-103646600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:103645000-103647800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:103645200-103646600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:103645600-103660000	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:103646000-103647000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr8:103646000-103647000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:103646000-103647000	Enhancers	Fetal Muscle Trunk	muscle
15	chr8:103646000-103648200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr8:103646400-103646600	Enhancers	Psoas Muscle	Psoas
17	chr8:103646400-103647000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr8:103646400-103647000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr8:103646400-103647400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:103646400-103648000	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr8:103646400-103648000	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr8:103646400-103648000	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links