Variant report

Variant	rs17187027
Chromosome Location	chr8:57835489-57835490
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10096356	0.94[ASN][1000 genomes]
rs11987435	0.88[ASN][1000 genomes]
rs11991623	0.94[ASN][1000 genomes]
rs11993931	0.87[CEU][hapmap]
rs11995615	0.94[ASN][1000 genomes]
rs13340556	0.88[ASN][1000 genomes]
rs16921328	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17186180	0.94[ASN][1000 genomes]
rs17790033	0.91[ASN][1000 genomes]
rs17790795	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17791051	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60325275	0.88[ASN][1000 genomes]
rs60942161	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029443	chr8:57748114-58057656	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:57831000-57849600	Weak transcription	Pancreas	Pancrea
2	chr8:57833000-57836000	Enhancers	Ovary	ovary
3	chr8:57835000-57835600	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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