Variant report

Variant	rs17190210
Chromosome Location	chr13:98013463-98013464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:98011835..98013519-chr13:98027401..98029954,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16952071	0.91[EUR][1000 genomes]
rs17190203	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17268915	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17268922	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2220971	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3825422	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55684003	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59036109	0.83[EUR][1000 genomes]
rs59512800	0.92[EUR][1000 genomes]
rs59788734	0.92[EUR][1000 genomes]
rs60452878	0.92[EUR][1000 genomes]
rs60805672	0.92[EUR][1000 genomes]
rs72637476	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7318821	0.92[EUR][1000 genomes]
rs7327210	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7333641	0.82[EUR][1000 genomes]
rs7358848	0.89[EUR][1000 genomes]
rs8000986	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9300404	0.92[EUR][1000 genomes]
rs9556704	0.81[EUR][1000 genomes]
rs9584547	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9584554	0.93[EUR][1000 genomes]
rs9584555	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9584556	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9584559	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9584560	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9584564	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr13:97994200-98016200	Weak transcription	NHDF-Ad	bronchial
5	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
6	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
7	chr13:97997400-98019000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:97998400-98015800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:97999600-98019200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr13:98002400-98027200	Weak transcription	Lung	lung
11	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
12	chr13:98002600-98013600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr13:98002600-98021600	Weak transcription	Colonic Mucosa	Colon
14	chr13:98003200-98021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr13:98003800-98018000	Weak transcription	Fetal Brain Male	brain
16	chr13:98003800-98019000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr13:98004000-98018600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr13:98004000-98019200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr13:98004000-98021000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr13:98004200-98014200	Weak transcription	Fetal Intestine Small	intestine
21	chr13:98004400-98019400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr13:98005400-98021600	Weak transcription	Thymus	Thymus
23	chr13:98006600-98020600	Strong transcription	HUVEC	blood vessel
24	chr13:98006800-98014800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr13:98006800-98018600	Weak transcription	HSMMtube	muscle
26	chr13:98008600-98014800	Weak transcription	Fetal Heart	heart
27	chr13:98008600-98015200	Strong transcription	NH-A	brain
28	chr13:98009000-98015200	Strong transcription	Osteobl	bone
29	chr13:98009200-98015000	Weak transcription	Psoas Muscle	Psoas
30	chr13:98009200-98019200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:98009600-98019000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:98009800-98014800	Weak transcription	Aorta	Aorta
33	chr13:98010000-98014800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr13:98010000-98015000	Weak transcription	Gastric	stomach
35	chr13:98010000-98027400	Weak transcription	Esophagus	oesophagus
36	chr13:98010600-98014800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr13:98010800-98027400	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr13:98011000-98014800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr13:98011000-98015800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr13:98011600-98017400	Strong transcription	Primary hematopoietic stem cells	blood
41	chr13:98011800-98013800	Enhancers	Brain Inferior Temporal Lobe	brain
42	chr13:98011800-98014600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr13:98011800-98014800	Strong transcription	Liver	Liver
44	chr13:98011800-98014800	Strong transcription	HepG2	liver
45	chr13:98011800-98019200	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr13:98011800-98020800	Weak transcription	Stomach Mucosa	stomach
47	chr13:98012000-98014800	Weak transcription	Colon Smooth Muscle	Colon
48	chr13:98012000-98019400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:98012200-98014400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr13:98012200-98014800	Weak transcription	Rectal Smooth Muscle	rectum

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