Variant report

Variant	rs7333641
Chromosome Location	chr13:98019036-98019037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr13:98018912-98019169	HepG2	liver:	n/a	chr13:98019040-98019053 chr13:98019040-98019051 chr13:98019042-98019051
2	POLR2A	chr13:98014322-98022665	K562	blood:	n/a	n/a

Variant related genes	Relation type
RNA5SP37	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16952071	0.95[CEU][hapmap];0.85[GIH][hapmap]
rs17190203	0.95[CEU][hapmap];0.82[GIH][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs17190210	0.82[EUR][1000 genomes]
rs2220971	0.95[CEU][hapmap];0.80[EUR][1000 genomes]
rs3825422	0.89[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4578507	0.81[LWK][hapmap]
rs7318821	0.95[CEU][hapmap]
rs7358848	0.88[CEU][hapmap]
rs8000986	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9582124	0.86[CEU][hapmap];0.81[LWK][hapmap]
rs9584547	0.89[ASW][hapmap];0.91[CEU][hapmap];0.85[GIH][hapmap];0.81[LWK][hapmap]
rs9584555	0.81[EUR][1000 genomes]
rs9584556	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9584559	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs9584560	0.95[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9584564	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
5	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
6	chr13:97999600-98019200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr13:98002400-98027200	Weak transcription	Lung	lung
8	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
9	chr13:98002600-98021600	Weak transcription	Colonic Mucosa	Colon
10	chr13:98003200-98021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr13:98004000-98019200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr13:98004000-98021000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr13:98004400-98019400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr13:98005400-98021600	Weak transcription	Thymus	Thymus
15	chr13:98006600-98020600	Strong transcription	HUVEC	blood vessel
16	chr13:98009200-98019200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr13:98010000-98027400	Weak transcription	Esophagus	oesophagus
18	chr13:98010800-98027400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr13:98011800-98019200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr13:98011800-98020800	Weak transcription	Stomach Mucosa	stomach
21	chr13:98012000-98019400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:98012200-98020400	Strong transcription	Fetal Lung	lung
23	chr13:98012800-98019200	Strong transcription	Placenta	Placenta
24	chr13:98012800-98019200	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr13:98012800-98019400	Strong transcription	Duodenum Mucosa	Duodenum
26	chr13:98012800-98020200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr13:98013000-98020200	Strong transcription	Primary T cells from cord blood	blood
28	chr13:98013600-98019200	Weak transcription	Fetal Thymus	thymus
29	chr13:98013800-98021200	Weak transcription	NHEK	skin
30	chr13:98014800-98020000	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr13:98015000-98019800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr13:98015200-98036600	Weak transcription	Fetal Heart	heart
33	chr13:98015600-98019200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr13:98015600-98019400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr13:98015600-98020400	Strong transcription	HepG2	liver
36	chr13:98015800-98020400	Strong transcription	K562	blood
37	chr13:98015800-98023600	Weak transcription	Gastric	stomach
38	chr13:98016000-98019200	Strong transcription	Adipose Nuclei	Adipose
39	chr13:98016200-98019200	Weak transcription	Fetal Stomach	stomach
40	chr13:98016200-98019400	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr13:98016400-98020600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
42	chr13:98016600-98019200	Weak transcription	Colon Smooth Muscle	Colon
43	chr13:98016600-98019600	Enhancers	Brain Hippocampus Middle	brain
44	chr13:98016800-98019200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr13:98016800-98019200	Weak transcription	Pancreas	Pancrea
46	chr13:98016800-98019400	Weak transcription	Psoas Muscle	Psoas
47	chr13:98016800-98020400	Strong transcription	Ovary	ovary
48	chr13:98017000-98021000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr13:98017200-98019400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr13:98017200-98023600	Weak transcription	Fetal Muscle Trunk	muscle

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