Variant report

Variant	rs9582124
Chromosome Location	chr13:97969765-97969766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97964833..97966698-chr13:97969721..97972103,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16952071	0.91[CEU][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17190203	0.91[CEU][hapmap];0.86[TSI][hapmap]
rs17268915	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17268922	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1974085	0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs2220971	0.91[CEU][hapmap]
rs3825422	0.91[CEU][hapmap];0.86[TSI][hapmap]
rs4441122	0.81[TSI][hapmap]
rs4578507	0.91[CEU][hapmap];0.94[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4771992	0.86[TSI][hapmap]
rs55684003	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs59036109	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59512800	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59788734	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60452878	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60805672	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72637476	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7318821	0.91[CEU][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7333641	0.86[CEU][hapmap];0.81[LWK][hapmap]
rs7358848	0.89[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8000986	0.82[CEU][hapmap]
rs9300404	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9554389	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9556704	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9584547	0.95[CEU][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9584549	0.85[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9584554	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9584555	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9584556	0.85[AMR][1000 genomes]
rs9584559	0.91[CEU][hapmap]
rs9584560	0.91[CEU][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
3	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
4	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
6	chr13:97954400-97986200	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr13:97955000-97987000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr13:97955200-97970400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr13:97955200-97986800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr13:97955400-97971400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr13:97959000-97970400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:97959000-97971200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr13:97959200-97970400	Weak transcription	Small Intestine	intestine
14	chr13:97959400-97988800	Weak transcription	Fetal Intestine Large	intestine
15	chr13:97961000-97973800	Weak transcription	NHEK	skin
16	chr13:97961400-97975200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr13:97961400-97987200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr13:97961600-97971000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:97961600-97971200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr13:97961600-97975400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:97961800-97970400	Weak transcription	Fetal Kidney	kidney
22	chr13:97961800-97970400	Weak transcription	HSMM	muscle
23	chr13:97961800-97971000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr13:97961800-97975200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr13:97961800-97977600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr13:97961800-97978000	Weak transcription	HMEC	breast
27	chr13:97962000-97971000	Weak transcription	Gastric	stomach
28	chr13:97962000-97979200	Weak transcription	HUVEC	blood vessel
29	chr13:97962000-97991200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr13:97962400-97971000	Weak transcription	NH-A	brain
31	chr13:97962400-97978200	Weak transcription	K562	blood
32	chr13:97962600-97971200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr13:97963000-97972600	Enhancers	Brain Substantia Nigra	brain
34	chr13:97963000-97984400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr13:97963600-97977000	Weak transcription	Hela-S3	cervix
36	chr13:97964200-97970400	Weak transcription	A549	lung
37	chr13:97965000-97972600	Enhancers	Brain Hippocampus Middle	brain
38	chr13:97965200-97969800	Enhancers	Psoas Muscle	Psoas
39	chr13:97965200-97985800	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr13:97965600-97988800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr13:97965800-97971600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr13:97965800-97987200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr13:97966600-97970800	Weak transcription	HSMMtube	muscle
44	chr13:97966800-97969800	Strong transcription	HepG2	liver
45	chr13:97967000-97980400	Weak transcription	Fetal Thymus	thymus
46	chr13:97967400-97972600	Enhancers	Colon Smooth Muscle	Colon
47	chr13:97967400-97991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr13:97967600-97969800	Enhancers	Left Ventricle	heart
49	chr13:97967600-97970600	Enhancers	Right Ventricle	heart
50	chr13:97967600-97972600	Enhancers	Brain Cingulate Gyrus	brain

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