Variant report

Variant	rs4771992
Chromosome Location	chr13:97954425-97954426
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97944192..97946659-chr13:97951933..97954715,2	MCF-7	breast:
2	chr13:97946659..97950744-chr13:97950983..97954750,4	MCF-7	breast:
3	chr13:97940763..97942613-chr13:97953141..97954942,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11617901	0.94[CHB][hapmap]
rs16952071	0.84[TSI][hapmap]
rs17190203	0.82[TSI][hapmap]
rs1974085	0.83[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1974086	0.83[CHD][hapmap]
rs3825422	0.82[TSI][hapmap]
rs4441122	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4578507	0.88[TSI][hapmap]
rs4612924	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes]
rs4771989	0.90[CHB][hapmap];0.88[CHD][hapmap]
rs4771991	0.81[CHD][hapmap]
rs6491347	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7318821	0.86[TSI][hapmap]
rs7999382	0.95[CHB][hapmap];0.88[CHD][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs9513224	1.00[CHB][hapmap];0.81[CHD][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs9516884	0.85[CHB][hapmap]
rs9516888	0.81[CHB][hapmap];0.87[CHD][hapmap]
rs9516889	0.95[CHB][hapmap]
rs9516900	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9582124	0.86[TSI][hapmap]
rs9584547	0.84[TSI][hapmap]
rs9584549	0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
5	chr13:97935600-97954800	Weak transcription	Colonic Mucosa	Colon
6	chr13:97942800-97995200	Weak transcription	Thymus	Thymus
7	chr13:97943400-97957800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr13:97946400-97956400	Enhancers	Brain Cingulate Gyrus	brain
9	chr13:97946600-97956400	Enhancers	Brain Anterior Caudate	brain
10	chr13:97948000-97958600	Weak transcription	Fetal Stomach	stomach
11	chr13:97948200-97958200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr13:97948600-97956400	Enhancers	Brain Angular Gyrus	brain
13	chr13:97948600-97958400	Weak transcription	HSMMtube	muscle
14	chr13:97948600-97971600	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr13:97949800-97955800	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr13:97950000-97958400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr13:97950000-97958400	Weak transcription	Fetal Intestine Small	intestine
18	chr13:97950000-97971200	Weak transcription	Stomach Mucosa	stomach
19	chr13:97950200-97961000	Weak transcription	K562	blood
20	chr13:97950200-97965200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:97950800-97965200	Weak transcription	Primary hematopoietic stem cells	blood
22	chr13:97951200-97958400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr13:97951200-97958400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr13:97951200-97958600	Weak transcription	HSMM	muscle
25	chr13:97951200-97962600	Enhancers	Brain Hippocampus Middle	brain
26	chr13:97951400-97954800	Enhancers	Colon Smooth Muscle	Colon
27	chr13:97951400-97955400	Weak transcription	Small Intestine	intestine
28	chr13:97951400-97956400	Enhancers	Brain Substantia Nigra	brain
29	chr13:97951400-97958400	Weak transcription	Fetal Kidney	kidney
30	chr13:97951400-97958800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr13:97951400-97960000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr13:97951600-97954800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr13:97951600-97958400	Weak transcription	NH-A	brain
34	chr13:97951600-97958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr13:97951600-97958600	Weak transcription	Osteobl	bone
36	chr13:97951800-97958000	Weak transcription	NHLF	lung
37	chr13:97952000-97955800	Enhancers	Right Ventricle	heart
38	chr13:97952200-97955800	Enhancers	Pancreas	Pancrea
39	chr13:97952200-97955800	Enhancers	Psoas Muscle	Psoas
40	chr13:97952400-97955200	Enhancers	Primary B cells from peripheral blood	blood
41	chr13:97952600-97955800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr13:97952600-97958200	Weak transcription	Aorta	Aorta
43	chr13:97952800-97955200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr13:97952800-97955600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr13:97952800-97955800	Enhancers	Ovary	ovary
46	chr13:97952800-97956400	Enhancers	HepG2	liver
47	chr13:97953000-97955800	Enhancers	HUVEC	blood vessel
48	chr13:97953200-97955000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr13:97953200-97955200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr13:97953200-97955800	Enhancers	Right Atrium	heart

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