Variant report

Variant	rs9516889
Chromosome Location	chr13:97935379-97935380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:97933982..97936266-chr13:97936651..97939517,2	MCF-7	breast:
2	chr13:97930811..97933716-chr13:97934774..97936909,2	MCF-7	breast:
3	chr13:97922761..97924457-chr13:97933917..97935651,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11617901	1.00[CHB][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1974085	0.86[CHB][hapmap]
rs4441122	0.95[CHB][hapmap]
rs4612924	0.95[CHB][hapmap]
rs4771989	0.95[CHB][hapmap];0.88[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4771992	0.95[CHB][hapmap]
rs7329525	0.81[EUR][1000 genomes]
rs7333604	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7334227	0.84[EUR][1000 genomes]
rs7999382	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs9513224	0.96[CEU][hapmap];0.95[CHB][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9516884	0.85[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9516885	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9516900	0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
2	chr13:97924800-97936200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr13:97925200-97936400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:97925600-97935600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr13:97925800-97936600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:97925800-97987200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr13:97929000-97937600	Enhancers	Colon Smooth Muscle	Colon
8	chr13:97929000-97947200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr13:97929200-97936400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:97929400-97955000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr13:97929600-97938800	Weak transcription	Fetal Intestine Small	intestine
12	chr13:97929600-97953400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr13:97929800-97936000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr13:97929800-97953200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:97929800-97953400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:97930600-97937000	Enhancers	Brain Cingulate Gyrus	brain
17	chr13:97930800-97936800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr13:97931000-97935600	Strong transcription	Primary T cells from cord blood	blood
19	chr13:97931000-97953600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr13:97931200-97936200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr13:97931200-97949000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr13:97931400-97935800	Enhancers	NHEK	skin
23	chr13:97931600-97936400	Weak transcription	Fetal Intestine Large	intestine
24	chr13:97931600-97936800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr13:97931800-97935600	Weak transcription	Stomach Mucosa	stomach
26	chr13:97932000-97935800	Strong transcription	Primary B cells from cord blood	blood
27	chr13:97932000-97938800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr13:97932200-97936400	Enhancers	HMEC	breast
29	chr13:97932200-97941200	Enhancers	Brain Substantia Nigra	brain
30	chr13:97932800-97937000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr13:97933000-97936400	Enhancers	Rectal Smooth Muscle	rectum
32	chr13:97933000-97938600	Genic enhancers	Liver	Liver
33	chr13:97933000-97947800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr13:97933000-97953600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr13:97933200-97936600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr13:97933200-97938200	Weak transcription	Fetal Thymus	thymus
37	chr13:97933200-97938400	Weak transcription	Thymus	Thymus
38	chr13:97933200-97939200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr13:97933200-97939800	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr13:97933200-97943000	Weak transcription	Osteobl	bone
41	chr13:97933200-97946600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr13:97933200-97946600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr13:97933200-97947400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr13:97933200-97949600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr13:97933200-97970400	Weak transcription	Placenta	Placenta
46	chr13:97933400-97936200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr13:97933400-97936600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr13:97933400-97938200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr13:97933400-97940600	Weak transcription	Fetal Kidney	kidney
50	chr13:97933400-97952400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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