Variant report

Variant	rs7329525
Chromosome Location	chr13:97918324-97918325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:97918195..97920707-chr13:97920859..97922719,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11617901	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7333604	0.82[AMR][1000 genomes]
rs7334227	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516884	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9516885	0.80[AMR][1000 genomes]
rs9516889	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045777	chr13:97875574-97955134	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97903400-97920600	Weak transcription	Thymus	Thymus
2	chr13:97906800-97919800	Enhancers	Brain Anterior Caudate	brain
3	chr13:97909200-97918600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr13:97910400-97918600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:97910600-97927600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr13:97910600-97935000	Weak transcription	Colonic Mucosa	Colon
7	chr13:97910800-97918800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr13:97911000-97918600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:97911000-97919200	Weak transcription	Fetal Kidney	kidney
10	chr13:97911200-97918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:97911200-97919200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:97911400-97919200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr13:97911400-97919600	Weak transcription	Primary B cells from cord blood	blood
14	chr13:97912000-97918600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:97912200-97919200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr13:97912400-97918600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:97912400-97920400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:97912800-97918600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr13:97912800-97918800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr13:97912800-97925200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr13:97913000-97918400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr13:97913000-97918600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr13:97913000-97919800	Weak transcription	NHEK	skin
24	chr13:97913200-97924800	Weak transcription	Stomach Mucosa	stomach
25	chr13:97913400-97920000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr13:97913600-97919600	Weak transcription	Fetal Intestine Large	intestine
27	chr13:97913600-97925200	Weak transcription	HSMMtube	muscle
28	chr13:97913600-97926600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr13:97913800-97918600	Weak transcription	NH-A	brain
30	chr13:97913800-97919400	Weak transcription	Fetal Heart	heart
31	chr13:97913800-97920200	Weak transcription	Primary T cells from cord blood	blood
32	chr13:97913800-97926600	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr13:97914000-97919400	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr13:97914200-97918600	Weak transcription	HMEC	breast
35	chr13:97914200-97920200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr13:97914200-97925200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr13:97914200-97925400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr13:97914200-97927600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr13:97914200-97927800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr13:97914200-97960200	Weak transcription	Fetal Brain Male	brain
41	chr13:97914400-97918600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr13:97914400-97921400	Weak transcription	HSMM	muscle
43	chr13:97914400-97927400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr13:97914400-97928000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:97914400-97929000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr13:97914600-97918600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr13:97914600-97918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr13:97914600-97918600	Weak transcription	Aorta	Aorta
49	chr13:97914600-97918600	Weak transcription	NHLF	lung
50	chr13:97914600-97918800	Weak transcription	Placenta	Placenta

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