Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10505355	1.00[JPT][hapmap]
rs1058913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11526	1.00[JPT][hapmap]
rs11775043	1.00[JPT][hapmap]
rs11782222	1.00[JPT][hapmap]
rs11784229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11785549	1.00[JPT][hapmap]
rs1381333	1.00[JPT][hapmap]
rs1381334	1.00[JPT][hapmap]
rs1381335	1.00[JPT][hapmap]
rs14324	1.00[JPT][hapmap]
rs1461690	1.00[JPT][hapmap]
rs1599473	0.85[CEU][hapmap];1.00[JPT][hapmap]
rs16892729	0.86[EUR][1000 genomes]
rs17187482	1.00[JPT][hapmap]
rs17192692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17791184	1.00[JPT][hapmap]
rs17791208	1.00[JPT][hapmap]
rs17801314	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34112166	1.00[JPT][hapmap]
rs4123837	1.00[JPT][hapmap]
rs7001817	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7001971	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72688207	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72688208	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7816205	1.00[JPT][hapmap]
rs7816347	1.00[JPT][hapmap]
rs7834596	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120541800-120543000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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