Variant report

Variant	rs17791208
Chromosome Location	chr8:120432725-120432726
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:120432511..120434359-chr8:120436163..120438609,3	K562	blood:
2	chr8:120426975..120428854-chr8:120430579..120432749,2	K562	blood:
3	chr8:120432511..120435725-chr8:120436931..120439834,3	K562	blood:

Variant related genes	Relation type
ENSG00000136999	Chromatin interaction

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10505355	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs10505356	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10505357	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10505359	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10505361	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10505362	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10575	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1057732	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1058913	1.00[JPT][hapmap]
rs11526	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11775043	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11775209	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11778277	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11778491	0.81[AMR][1000 genomes]
rs11779998	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11780146	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11780200	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11780243	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11781723	0.84[EUR][1000 genomes]
rs11782103	0.81[AMR][1000 genomes]
rs11782222	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11782840	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11783464	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11783703	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11784229	1.00[JPT][hapmap]
rs11784242	0.81[AMR][1000 genomes]
rs11785549	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11786524	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11786573	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11786577	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1381333	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1381334	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1381335	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs14324	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1461690	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1461693	0.81[AMR][1000 genomes]
rs1461696	0.81[AMR][1000 genomes]
rs1551784	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1599473	1.00[JPT][hapmap]
rs16892511	0.84[EUR][1000 genomes]
rs17187482	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17187503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17187655	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17188194	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17188373	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17189020	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17192692	1.00[JPT][hapmap]
rs17790807	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17791184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17791334	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17792124	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17792171	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17801314	1.00[JPT][hapmap]
rs1895706	1.00[JPT][hapmap]
rs2432984	1.00[JPT][hapmap]
rs2875872	1.00[JPT][hapmap]
rs34112166	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3928531	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4123837	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs55883962	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56013326	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56736221	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56774448	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56782665	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56860849	0.84[EUR][1000 genomes]
rs57333327	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57534632	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57788046	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58486051	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58576806	0.84[EUR][1000 genomes]
rs58619390	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58659618	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58936256	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs59780141	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60859300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60978064	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61064779	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61100635	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6996275	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7012790	0.81[AMR][1000 genomes]
rs7017173	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs722783	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7341594	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73709779	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73709783	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73711267	0.85[EUR][1000 genomes]
rs73713572	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73713574	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73713589	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs746642	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7815177	0.84[EUR][1000 genomes]
rs7815390	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs7816205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7816347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7828460	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7832471	0.84[EUR][1000 genomes]
rs7834463	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7834596	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120429400-120435200	Weak transcription	Pancreas	Pancrea
2	chr8:120429600-120435200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:120429600-120436800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:120429600-120437200	Weak transcription	NHLF	lung
5	chr8:120429800-120433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:120429800-120435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:120429800-120436800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:120429800-120437000	Weak transcription	Fetal Stomach	stomach
9	chr8:120429800-120437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:120430000-120432800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:120430600-120437800	Weak transcription	Hela-S3	cervix
12	chr8:120430800-120433000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:120431000-120439600	Weak transcription	NHDF-Ad	bronchial
14	chr8:120431800-120433000	Active TSS	Aorta	Aorta
15	chr8:120431800-120434000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr8:120432000-120437000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:120432600-120434400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:120432600-120435200	Strong transcription	Fetal Muscle Leg	muscle
19	chr8:120432600-120438200	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links