Variant report

Variant	rs1461696
Chromosome Location	chr8:120450605-120450606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120098391..120099543-chr8:120449221..120451236,7	MCF-7	breast:

Extended variants
information (count: 142 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs10505355	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10505356	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10505357	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10505359	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10505361	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10505362	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10575	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1057732	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10955927	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11526	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775043	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11775209	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11776544	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11778277	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11778491	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11779998	0.81[EUR][1000 genomes]
rs11780146	0.81[EUR][1000 genomes]
rs11780200	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11780243	0.81[EUR][1000 genomes]
rs11781027	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11781723	0.90[EUR][1000 genomes]
rs11782103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782840	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11782995	0.94[EUR][1000 genomes]
rs11783464	0.80[EUR][1000 genomes]
rs11783703	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11784242	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11785549	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11786524	0.80[EUR][1000 genomes]
rs11786573	0.80[EUR][1000 genomes]
rs11786577	0.80[EUR][1000 genomes]
rs1381333	0.89[EUR][1000 genomes]
rs1381334	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1381335	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs1381338	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs14324	0.82[EUR][1000 genomes]
rs1461690	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1461691	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461695	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461697	0.96[ASN][1000 genomes]
rs1461698	0.96[ASN][1000 genomes]
rs1551784	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16892491	0.82[ASN][1000 genomes]
rs16892497	0.82[ASN][1000 genomes]
rs16892511	0.90[EUR][1000 genomes]
rs16892552	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16892582	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16892586	0.96[ASN][1000 genomes]
rs16892623	0.96[ASN][1000 genomes]
rs16892625	0.96[ASN][1000 genomes]
rs16892628	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16892630	0.96[ASN][1000 genomes]
rs16892631	0.96[ASN][1000 genomes]
rs16892633	0.96[ASN][1000 genomes]
rs16892636	0.96[ASN][1000 genomes]
rs16892639	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16892644	0.96[ASN][1000 genomes]
rs16892646	0.96[ASN][1000 genomes]
rs17187482	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17187503	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17187655	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188194	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17188373	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17189020	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17790807	0.81[EUR][1000 genomes]
rs17791184	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17791208	0.81[AMR][1000 genomes]
rs17791334	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17792124	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17792171	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1870779	0.94[ASN][1000 genomes]
rs2071518	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2071519	1.00[CEU][hapmap];0.83[CHB][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2071526	0.86[CEU][hapmap];0.84[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279112	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2326246	0.96[ASN][1000 genomes]
rs3928531	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4123837	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs55883962	0.81[EUR][1000 genomes]
rs55976504	0.80[ASN][1000 genomes]
rs56013326	0.82[EUR][1000 genomes]
rs56736221	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56768061	0.82[ASN][1000 genomes]
rs56774448	0.80[EUR][1000 genomes]
rs56782665	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56860849	0.90[EUR][1000 genomes]
rs57103042	0.82[ASN][1000 genomes]
rs57333327	0.80[EUR][1000 genomes]
rs57534632	0.81[EUR][1000 genomes]
rs57788046	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58210708	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58486051	0.80[EUR][1000 genomes]
rs58576806	0.90[EUR][1000 genomes]
rs58619390	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs58659618	0.81[EUR][1000 genomes]
rs58936256	0.81[EUR][1000 genomes]
rs59780141	0.80[EUR][1000 genomes]
rs60484498	0.82[ASN][1000 genomes]
rs60859300	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60978064	0.81[EUR][1000 genomes]
rs61064779	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61100635	0.81[EUR][1000 genomes]
rs67665719	0.81[EUR][1000 genomes]
rs6982139	0.96[ASN][1000 genomes]
rs6983056	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6983393	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6990760	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6993389	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996275	0.80[EUR][1000 genomes]
rs6997943	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7012790	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014927	0.86[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7015188	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016011	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7017173	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs722783	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72684286	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72684289	0.80[ASN][1000 genomes]
rs72684293	0.82[ASN][1000 genomes]
rs72686305	0.96[ASN][1000 genomes]
rs72686306	0.96[ASN][1000 genomes]
rs7341594	0.80[EUR][1000 genomes]
rs73709783	0.81[EUR][1000 genomes]
rs73711267	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73713572	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73713574	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73713589	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs746642	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7815177	0.90[EUR][1000 genomes]
rs7815390	0.90[EUR][1000 genomes]
rs7816205	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7816347	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7828460	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7832471	0.90[EUR][1000 genomes]
rs7834463	0.81[EUR][1000 genomes]
rs7834596	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs7839760	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs922265	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120448400-120451200	Enhancers	Fetal Muscle Leg	muscle
2	chr8:120448400-120452800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:120448600-120451400	Enhancers	Fetal Stomach	stomach
4	chr8:120449800-120451200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:120450000-120451800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:120450400-120451400	Weak transcription	NHDF-Ad	bronchial
7	chr8:120450400-120451600	Enhancers	Fetal Lung	lung
8	chr8:120450600-120451600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr8:120450600-120451600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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