Variant report

Variant	rs58210708
Chromosome Location	chr8:120439009-120439010
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120432511..120435725-chr8:120436931..120439834,3	K562	blood:

Extended variants
information (count: 130 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:126)

rs_ID	r²[population]
rs10505355	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10505356	0.85[EUR][1000 genomes]
rs10505357	0.85[EUR][1000 genomes]
rs10505358	0.94[ASN][1000 genomes]
rs10505359	0.85[EUR][1000 genomes]
rs10505361	0.83[EUR][1000 genomes]
rs10505362	0.83[EUR][1000 genomes]
rs10575	0.85[EUR][1000 genomes]
rs1057732	0.85[EUR][1000 genomes]
rs10955927	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11526	0.85[EUR][1000 genomes]
rs11775043	0.85[EUR][1000 genomes]
rs11775209	0.83[EUR][1000 genomes]
rs11776544	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11778277	0.83[EUR][1000 genomes]
rs11778491	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11779998	0.84[EUR][1000 genomes]
rs11780146	0.84[EUR][1000 genomes]
rs11780200	0.83[EUR][1000 genomes]
rs11780243	0.84[EUR][1000 genomes]
rs11781027	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11781723	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11782103	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11782222	0.82[EUR][1000 genomes]
rs11782840	0.85[EUR][1000 genomes]
rs11782995	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11783464	0.83[EUR][1000 genomes]
rs11783703	0.85[EUR][1000 genomes]
rs11784242	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11785549	0.85[EUR][1000 genomes]
rs11786524	0.83[EUR][1000 genomes]
rs11786573	0.83[EUR][1000 genomes]
rs11786577	0.83[EUR][1000 genomes]
rs1381333	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1381334	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1381335	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1381338	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs14324	0.85[EUR][1000 genomes]
rs1461690	0.85[EUR][1000 genomes]
rs1461691	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1461692	0.91[ASN][1000 genomes]
rs1461693	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1461695	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1461696	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1551784	0.83[EUR][1000 genomes]
rs16892511	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16892552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16892553	0.94[ASN][1000 genomes]
rs16892556	0.94[ASN][1000 genomes]
rs16892582	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16892628	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16892639	0.89[EUR][1000 genomes]
rs17187482	0.85[EUR][1000 genomes]
rs17187503	0.85[EUR][1000 genomes]
rs17187655	0.85[EUR][1000 genomes]
rs17188194	0.85[EUR][1000 genomes]
rs17188373	0.85[EUR][1000 genomes]
rs17189020	0.83[EUR][1000 genomes]
rs17790807	0.84[EUR][1000 genomes]
rs17791184	0.84[EUR][1000 genomes]
rs17791334	0.85[EUR][1000 genomes]
rs17792124	0.83[EUR][1000 genomes]
rs17792171	0.83[EUR][1000 genomes]
rs2071519	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071526	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2100836	0.85[ASN][1000 genomes]
rs2279112	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34112166	0.82[EUR][1000 genomes]
rs3928531	0.83[EUR][1000 genomes]
rs4123837	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55883962	0.84[EUR][1000 genomes]
rs56013326	0.85[EUR][1000 genomes]
rs56736221	0.85[EUR][1000 genomes]
rs56774448	0.83[EUR][1000 genomes]
rs56782665	0.85[EUR][1000 genomes]
rs56860849	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs57333327	0.83[EUR][1000 genomes]
rs57534632	0.84[EUR][1000 genomes]
rs57788046	0.85[EUR][1000 genomes]
rs58486051	0.83[EUR][1000 genomes]
rs58576806	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58619390	0.85[EUR][1000 genomes]
rs58659618	0.84[EUR][1000 genomes]
rs58936256	0.84[EUR][1000 genomes]
rs59780141	0.83[EUR][1000 genomes]
rs60859300	0.84[EUR][1000 genomes]
rs60978064	0.84[EUR][1000 genomes]
rs61064779	0.85[EUR][1000 genomes]
rs61100635	0.84[EUR][1000 genomes]
rs67665719	0.81[EUR][1000 genomes]
rs6983056	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6983393	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6990760	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6993389	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6996275	0.83[EUR][1000 genomes]
rs6997943	0.89[EUR][1000 genomes]
rs7012790	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7014927	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7015188	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7016011	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7017173	0.83[EUR][1000 genomes]
rs722783	0.82[EUR][1000 genomes]
rs72684286	0.87[EUR][1000 genomes]
rs72684294	0.85[ASN][1000 genomes]
rs72684295	0.85[ASN][1000 genomes]
rs72684297	0.85[ASN][1000 genomes]
rs72684298	0.92[ASN][1000 genomes]
rs72684301	0.94[ASN][1000 genomes]
rs72686314	0.91[ASN][1000 genomes]
rs7341594	0.83[EUR][1000 genomes]
rs73709779	0.82[EUR][1000 genomes]
rs73709783	0.84[EUR][1000 genomes]
rs73711267	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73713572	0.85[EUR][1000 genomes]
rs73713574	0.83[EUR][1000 genomes]
rs73713589	0.82[EUR][1000 genomes]
rs746642	0.83[EUR][1000 genomes]
rs7815177	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7815390	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7816205	0.85[EUR][1000 genomes]
rs7816347	0.84[EUR][1000 genomes]
rs7828460	0.85[EUR][1000 genomes]
rs7832471	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7834463	0.84[EUR][1000 genomes]
rs7834596	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7839760	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv527032	chr8:120433976-120449997	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120431000-120439600	Weak transcription	NHDF-Ad	bronchial
2	chr8:120436000-120439600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:120436000-120439800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:120436800-120439400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:120437000-120439200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr8:120437000-120439600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:120437200-120440800	Weak transcription	Pancreas	Pancrea
8	chr8:120437400-120440000	Weak transcription	Aorta	Aorta
9	chr8:120437400-120440600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr8:120438000-120441000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:120438200-120439400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr8:120438400-120439400	Enhancers	Fetal Muscle Leg	muscle
13	chr8:120438800-120440000	Weak transcription	Fetal Lung	lung
14	chr8:120438800-120440800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:120439000-120439200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr8:120439000-120439200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links