Variant report

Variant	rs10505358
Chromosome Location	chr8:120437102-120437103
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120432511..120434359-chr8:120436163..120438609,3	K562	blood:
2	chr8:120432511..120435725-chr8:120436931..120439834,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1461692	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1461697	0.90[EUR][1000 genomes]
rs16892512	0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs16892524	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16892525	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16892527	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16892528	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16892552	0.97[ASN][1000 genomes]
rs16892553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892556	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892586	0.90[EUR][1000 genomes]
rs2071519	0.81[CHB][hapmap];0.86[JPT][hapmap];0.97[ASN][1000 genomes]
rs2100836	0.90[ASN][1000 genomes]
rs55976504	0.82[EUR][1000 genomes]
rs58210708	0.94[ASN][1000 genomes]
rs72684287	0.82[EUR][1000 genomes]
rs72684289	0.82[EUR][1000 genomes]
rs72684294	0.90[ASN][1000 genomes]
rs72684295	0.90[ASN][1000 genomes]
rs72684297	0.90[ASN][1000 genomes]
rs72684298	0.98[ASN][1000 genomes]
rs72684301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72686305	0.90[EUR][1000 genomes]
rs72686306	0.90[EUR][1000 genomes]
rs72686314	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv527032	chr8:120433976-120449997	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120429600-120437200	Weak transcription	NHLF	lung
2	chr8:120429800-120437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:120430600-120437800	Weak transcription	Hela-S3	cervix
4	chr8:120431000-120439600	Weak transcription	NHDF-Ad	bronchial
5	chr8:120432600-120438200	Weak transcription	Fetal Lung	lung
6	chr8:120433000-120438400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:120435400-120438400	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:120435600-120438000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:120436000-120439000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr8:120436000-120439600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:120436000-120439800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:120436800-120437400	Enhancers	Aorta	Aorta
13	chr8:120436800-120439000	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr8:120436800-120439000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr8:120436800-120439400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:120437000-120437200	Enhancers	Fetal Stomach	stomach
17	chr8:120437000-120437200	Enhancers	Pancreas	Pancrea
18	chr8:120437000-120437400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:120437000-120437800	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr8:120437000-120437800	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr8:120437000-120439000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:120437000-120439200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:120437000-120439600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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