Variant report

Variant	rs55976504
Chromosome Location	chr8:120401980-120401981
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10505358	0.82[EUR][1000 genomes]
rs10955927	0.81[ASN][1000 genomes]
rs11776544	0.81[ASN][1000 genomes]
rs11778491	0.81[ASN][1000 genomes]
rs11781027	0.81[ASN][1000 genomes]
rs11782103	0.81[ASN][1000 genomes]
rs11782995	0.94[ASN][1000 genomes]
rs11784242	0.81[ASN][1000 genomes]
rs1381338	0.81[ASN][1000 genomes]
rs1461691	0.81[ASN][1000 genomes]
rs1461692	0.82[EUR][1000 genomes]
rs1461693	0.81[ASN][1000 genomes]
rs1461695	0.81[ASN][1000 genomes]
rs1461696	0.80[ASN][1000 genomes]
rs1461697	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1461698	0.83[ASN][1000 genomes]
rs16892491	0.98[ASN][1000 genomes]
rs16892497	0.98[ASN][1000 genomes]
rs16892553	0.82[EUR][1000 genomes]
rs16892556	0.82[EUR][1000 genomes]
rs16892582	0.81[ASN][1000 genomes]
rs16892586	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16892623	0.83[ASN][1000 genomes]
rs16892625	0.83[ASN][1000 genomes]
rs16892628	0.80[ASN][1000 genomes]
rs16892630	0.83[ASN][1000 genomes]
rs16892631	0.83[ASN][1000 genomes]
rs16892633	0.83[ASN][1000 genomes]
rs16892636	0.83[ASN][1000 genomes]
rs16892639	0.81[ASN][1000 genomes]
rs16892644	0.83[ASN][1000 genomes]
rs16892646	0.83[ASN][1000 genomes]
rs1870779	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2071526	0.95[ASN][1000 genomes]
rs2279112	0.88[ASN][1000 genomes]
rs2326246	0.83[ASN][1000 genomes]
rs56768061	0.98[ASN][1000 genomes]
rs57103042	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60484498	0.98[ASN][1000 genomes]
rs67665719	0.84[ASN][1000 genomes]
rs67980272	0.96[ASN][1000 genomes]
rs6982139	0.83[ASN][1000 genomes]
rs6983056	0.81[ASN][1000 genomes]
rs6983393	0.81[ASN][1000 genomes]
rs6990760	0.81[ASN][1000 genomes]
rs6993389	0.81[ASN][1000 genomes]
rs6997943	0.81[ASN][1000 genomes]
rs7012790	0.81[ASN][1000 genomes]
rs7014927	0.87[ASN][1000 genomes]
rs7015188	0.81[ASN][1000 genomes]
rs7016011	0.81[ASN][1000 genomes]
rs72684286	0.98[ASN][1000 genomes]
rs72684287	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72684288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72684289	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684293	0.98[ASN][1000 genomes]
rs72684301	0.82[EUR][1000 genomes]
rs72686305	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72686306	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7839760	0.95[ASN][1000 genomes]
rs922265	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	esv3378587	chr8:120387820-120408400	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120399000-120412600	Weak transcription	Aorta	Aorta
2	chr8:120401800-120402000	Enhancers	Liver	Liver
3	chr8:120401800-120402000	Enhancers	Rectal Mucosa Donor 31	rectum

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