Variant report

Variant	rs60484498
Chromosome Location	chr8:120412604-120412605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120409746..120412128-chr8:120412438..120415019,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10955927	0.83[ASN][1000 genomes]
rs11776544	0.83[ASN][1000 genomes]
rs11778491	0.83[ASN][1000 genomes]
rs11781027	0.83[ASN][1000 genomes]
rs11782103	0.83[ASN][1000 genomes]
rs11782995	0.91[ASN][1000 genomes]
rs11784242	0.83[ASN][1000 genomes]
rs1381338	0.83[ASN][1000 genomes]
rs1461691	0.83[ASN][1000 genomes]
rs1461693	0.83[ASN][1000 genomes]
rs1461695	0.83[ASN][1000 genomes]
rs1461696	0.82[ASN][1000 genomes]
rs1461697	0.86[ASN][1000 genomes]
rs1461698	0.86[ASN][1000 genomes]
rs16892491	1.00[ASN][1000 genomes]
rs16892497	1.00[ASN][1000 genomes]
rs16892582	0.83[ASN][1000 genomes]
rs16892586	0.86[ASN][1000 genomes]
rs16892623	0.86[ASN][1000 genomes]
rs16892625	0.86[ASN][1000 genomes]
rs16892628	0.82[ASN][1000 genomes]
rs16892630	0.86[ASN][1000 genomes]
rs16892631	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16892633	0.86[ASN][1000 genomes]
rs16892636	0.86[ASN][1000 genomes]
rs16892639	0.83[ASN][1000 genomes]
rs16892644	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16892646	0.86[ASN][1000 genomes]
rs1870779	0.88[ASN][1000 genomes]
rs2071526	0.98[ASN][1000 genomes]
rs2279112	0.90[ASN][1000 genomes]
rs2326246	0.86[ASN][1000 genomes]
rs55976504	0.98[ASN][1000 genomes]
rs56768061	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57103042	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67665719	0.82[ASN][1000 genomes]
rs67980272	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6982139	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6983056	0.83[ASN][1000 genomes]
rs6983393	0.83[ASN][1000 genomes]
rs6990760	0.83[ASN][1000 genomes]
rs6993389	0.83[ASN][1000 genomes]
rs6997943	0.83[ASN][1000 genomes]
rs7012790	0.83[ASN][1000 genomes]
rs7014927	0.89[ASN][1000 genomes]
rs7015188	0.83[ASN][1000 genomes]
rs7016011	0.83[ASN][1000 genomes]
rs72684286	0.95[ASN][1000 genomes]
rs72684287	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72684288	0.94[ASN][1000 genomes]
rs72684289	0.98[ASN][1000 genomes]
rs72684293	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684294	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72686305	0.86[ASN][1000 genomes]
rs72686306	0.86[ASN][1000 genomes]
rs7839760	0.98[ASN][1000 genomes]
rs922265	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120408600-120415000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr8:120411800-120413200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:120412200-120412800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr8:120412400-120413200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr8:120412400-120414200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:120412600-120412800	ZNF genes & repeats	Aorta	Aorta

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