Variant report

Variant	rs16892628
Chromosome Location	chr8:120456870-120456871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10505355	0.82[EUR][1000 genomes]
rs10955927	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11776544	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11778491	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11781027	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11781723	0.82[EUR][1000 genomes]
rs11782103	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11782995	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11784242	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1381333	0.81[EUR][1000 genomes]
rs1381334	0.81[EUR][1000 genomes]
rs1381335	0.81[EUR][1000 genomes]
rs1381338	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461691	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461693	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461695	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461696	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1461697	0.96[ASN][1000 genomes]
rs1461698	0.96[ASN][1000 genomes]
rs16892491	0.82[ASN][1000 genomes]
rs16892497	0.82[ASN][1000 genomes]
rs16892511	0.82[EUR][1000 genomes]
rs16892552	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16892582	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16892586	0.96[ASN][1000 genomes]
rs16892623	0.96[ASN][1000 genomes]
rs16892625	0.96[ASN][1000 genomes]
rs16892630	0.96[ASN][1000 genomes]
rs16892631	0.96[ASN][1000 genomes]
rs16892633	0.96[ASN][1000 genomes]
rs16892636	0.96[ASN][1000 genomes]
rs16892639	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16892644	0.96[ASN][1000 genomes]
rs16892646	0.96[ASN][1000 genomes]
rs1870779	0.94[ASN][1000 genomes]
rs2071519	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2071526	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2279112	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2326246	0.96[ASN][1000 genomes]
rs4123837	0.81[EUR][1000 genomes]
rs55976504	0.80[ASN][1000 genomes]
rs56768061	0.82[ASN][1000 genomes]
rs56860849	0.82[EUR][1000 genomes]
rs57103042	0.82[ASN][1000 genomes]
rs58210708	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58576806	0.82[EUR][1000 genomes]
rs60484498	0.82[ASN][1000 genomes]
rs67665719	0.88[EUR][1000 genomes]
rs6982139	0.96[ASN][1000 genomes]
rs6983056	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6983393	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6990760	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6993389	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6997943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7012790	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014927	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7015188	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7016011	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72684286	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72684289	0.80[ASN][1000 genomes]
rs72684293	0.82[ASN][1000 genomes]
rs72686305	0.96[ASN][1000 genomes]
rs72686306	0.96[ASN][1000 genomes]
rs73711267	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7815177	0.82[EUR][1000 genomes]
rs7815390	0.82[EUR][1000 genomes]
rs7832471	0.82[EUR][1000 genomes]
rs7834596	0.82[EUR][1000 genomes]
rs7839760	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs922265	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120451800-120461400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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