Variant report

Variant	rs16892639
Chromosome Location	chr8:120462259-120462260
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10505355	0.82[EUR][1000 genomes]
rs10955927	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11776544	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11778491	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781027	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11781723	0.82[EUR][1000 genomes]
rs11782103	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11782995	0.88[EUR][1000 genomes]
rs11784242	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381333	0.81[EUR][1000 genomes]
rs1381334	0.81[EUR][1000 genomes]
rs1381335	0.81[EUR][1000 genomes]
rs1381338	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461691	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461693	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461695	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1461696	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1461697	0.98[ASN][1000 genomes]
rs1461698	0.98[ASN][1000 genomes]
rs16892491	0.83[ASN][1000 genomes]
rs16892497	0.83[ASN][1000 genomes]
rs16892511	0.82[EUR][1000 genomes]
rs16892552	0.89[EUR][1000 genomes]
rs16892582	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16892586	0.98[ASN][1000 genomes]
rs16892623	0.98[ASN][1000 genomes]
rs16892625	0.98[ASN][1000 genomes]
rs16892628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16892630	0.98[ASN][1000 genomes]
rs16892631	0.98[ASN][1000 genomes]
rs16892633	0.98[ASN][1000 genomes]
rs16892636	0.98[ASN][1000 genomes]
rs16892644	0.98[ASN][1000 genomes]
rs16892646	0.98[ASN][1000 genomes]
rs1870779	0.95[ASN][1000 genomes]
rs2071519	0.89[EUR][1000 genomes]
rs2071526	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2279112	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326246	0.98[ASN][1000 genomes]
rs4123837	0.81[EUR][1000 genomes]
rs55976504	0.81[ASN][1000 genomes]
rs56768061	0.83[ASN][1000 genomes]
rs56860849	0.82[EUR][1000 genomes]
rs57103042	0.83[ASN][1000 genomes]
rs58210708	0.89[EUR][1000 genomes]
rs58576806	0.82[EUR][1000 genomes]
rs60484498	0.83[ASN][1000 genomes]
rs67665719	0.88[EUR][1000 genomes]
rs6982139	0.98[ASN][1000 genomes]
rs6983056	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983393	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6990760	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993389	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997943	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012790	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014927	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7015188	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7016011	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72684286	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72684289	0.81[ASN][1000 genomes]
rs72684293	0.83[ASN][1000 genomes]
rs72686305	0.98[ASN][1000 genomes]
rs72686306	0.98[ASN][1000 genomes]
rs72686316	0.81[ASN][1000 genomes]
rs73711267	0.83[EUR][1000 genomes]
rs7815177	0.82[EUR][1000 genomes]
rs7815390	0.82[EUR][1000 genomes]
rs7832471	0.82[EUR][1000 genomes]
rs7834596	0.82[EUR][1000 genomes]
rs7839760	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs922265	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120458400-120464400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:120460400-120462400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:120460600-120462800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:120460800-120462400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:120460800-120465200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:120461200-120462400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr8:120461200-120464800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:120461400-120463200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:120462200-120462400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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