Variant report
| Variant | rs72684287 |
|---|---|
| Chromosome Location | chr8:120401675-120401676 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10505358 | 0.82[EUR][1000 genomes] |
| rs11782995 | 0.98[ASN][1000 genomes] |
| rs1461692 | 0.82[EUR][1000 genomes] |
| rs1461697 | 0.91[EUR][1000 genomes] |
| rs16892491 | 0.94[ASN][1000 genomes] |
| rs16892497 | 0.94[ASN][1000 genomes] |
| rs16892553 | 0.82[EUR][1000 genomes] |
| rs16892556 | 0.82[EUR][1000 genomes] |
| rs16892586 | 0.91[EUR][1000 genomes] |
| rs1870779 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2071526 | 0.92[ASN][1000 genomes] |
| rs2279112 | 0.84[ASN][1000 genomes] |
| rs55976504 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs56768061 | 0.94[ASN][1000 genomes] |
| rs57103042 | 0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60484498 | 0.87[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs67665719 | 0.88[ASN][1000 genomes] |
| rs67980272 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7014927 | 0.83[ASN][1000 genomes] |
| rs72684286 | 0.94[ASN][1000 genomes] |
| rs72684288 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72684289 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72684293 | 0.84[AFR][1000 genomes];0.94[ASN][1000 genomes] |
| rs72684301 | 0.82[EUR][1000 genomes] |
| rs72686305 | 0.91[EUR][1000 genomes] |
| rs72686306 | 0.91[EUR][1000 genomes] |
| rs7839760 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026655 | chr8:120282929-120522329 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv534028 | chr8:120348940-120906079 | Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 31 gene(s) | inside rSNPs | diseases |
| 4 | esv3378587 | chr8:120387820-120408400 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120399000-120412600 | Weak transcription | Aorta | Aorta |
