Variant report

Variant	rs16892524
Chromosome Location	chr8:120429479-120429480
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120276101..120276967-chr8:120428773..120429772,7	MCF-7	breast:
2	chr8:120275989..120276836-chr8:120428860..120429618,5	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10505358	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1461694	0.92[EUR][1000 genomes]
rs16892512	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892525	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892527	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16892528	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16892553	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16892556	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16892597	0.92[EUR][1000 genomes]
rs2326245	0.92[EUR][1000 genomes]
rs72684301	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120428000-120429600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr8:120428000-120429600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr8:120428000-120429600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:120428000-120429600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr8:120428000-120429600	Active TSS	Brain Angular Gyrus	brain
6	chr8:120428000-120429800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
7	chr8:120428000-120429800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:120428000-120430200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:120428000-120431200	Active TSS	Aorta	Aorta
10	chr8:120428200-120429600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr8:120428200-120429600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:120428200-120429600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr8:120428200-120429600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr8:120428200-120429600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr8:120428200-120429600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr8:120428200-120429600	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr8:120428200-120429600	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr8:120428200-120429600	Active TSS	Fetal Kidney	kidney
19	chr8:120428200-120429600	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr8:120428200-120429600	Active TSS	Right Atrium	heart
21	chr8:120428200-120429600	Flanking Active TSS	Osteobl	bone
22	chr8:120428200-120429800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:120428200-120429800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:120428200-120429800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:120428200-120429800	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr8:120428200-120431000	Active TSS	NHDF-Ad	bronchial
27	chr8:120428400-120429600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr8:120428400-120429600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
29	chr8:120428400-120429600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
30	chr8:120428400-120429600	Active TSS	Colon Smooth Muscle	Colon
31	chr8:120428400-120429800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:120428600-120429800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr8:120428800-120429600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr8:120429000-120429600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:120429000-120429600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
36	chr8:120429000-120429600	Enhancers	Placenta	Placenta
37	chr8:120429000-120429600	Bivalent Enhancer	Fetal Thymus	thymus
38	chr8:120429000-120429600	Enhancers	Spleen	Spleen
39	chr8:120429000-120429800	Active TSS	Duodenum Smooth Muscle	Duodenum
40	chr8:120429200-120429600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr8:120429200-120429600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:120429200-120429600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr8:120429200-120429600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:120429200-120429600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr8:120429200-120429600	Enhancers	Liver	Liver
46	chr8:120429200-120429600	Flanking Active TSS	Brain Hippocampus Middle	brain
47	chr8:120429200-120429600	Active TSS	Colonic Mucosa	Colon
48	chr8:120429200-120429600	Bivalent Enhancer	Fetal Intestine Large	intestine
49	chr8:120429200-120429600	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr8:120429200-120429600	Flanking Active TSS	Fetal Stomach	stomach

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