Variant report

Variant	rs16892528
Chromosome Location	chr8:120431954-120431955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:120426975..120428854-chr8:120430579..120432749,2	K562	blood:

Variant related genes	Relation type
ENSG00000136999	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10505358	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11985985	1.00[MEX][hapmap]
rs1461694	1.00[EUR][1000 genomes]
rs16892512	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16892524	1.00[CEU][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16892525	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16892527	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892553	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16892556	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs16892597	1.00[EUR][1000 genomes]
rs16892741	1.00[MEX][hapmap]
rs16892742	1.00[MEX][hapmap]
rs16892849	1.00[MEX][hapmap]
rs16892862	1.00[MEX][hapmap]
rs2326245	1.00[EUR][1000 genomes]
rs72684301	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7341607	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1026655	chr8:120282929-120522329	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv534028	chr8:120348940-120906079	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120429400-120435200	Weak transcription	Pancreas	Pancrea
2	chr8:120429600-120432000	Weak transcription	Fetal Lung	lung
3	chr8:120429600-120432200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr8:120429600-120435200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:120429600-120436800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:120429600-120437200	Weak transcription	NHLF	lung
7	chr8:120429800-120433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:120429800-120435200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:120429800-120436800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr8:120429800-120437000	Weak transcription	Fetal Stomach	stomach
11	chr8:120429800-120437400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:120430000-120432800	Transcr. at gene 5' and 3'	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:120430600-120437800	Weak transcription	Hela-S3	cervix
14	chr8:120430800-120433000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:120431000-120432000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr8:120431000-120439600	Weak transcription	NHDF-Ad	bronchial
17	chr8:120431400-120432000	Transcr. at gene 5' and 3'	Fetal Muscle Leg	muscle
18	chr8:120431400-120432000	Weak transcription	Gastric	stomach
19	chr8:120431600-120432600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr8:120431800-120432200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr8:120431800-120433000	Active TSS	Aorta	Aorta
22	chr8:120431800-120434000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links