Variant report

Variant	rs17191840
Chromosome Location	chr16:82815686-82815687
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82810032..82812890-chr16:82813373..82816205,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11640600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11642248	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11643292	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11646019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12386028	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12919538	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17192123	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17192152	0.86[CHB][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17276586	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17277145	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1903617	0.81[ASN][1000 genomes]
rs4783270	0.82[ASN][1000 genomes]
rs57519947	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59217991	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61037133	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62034546	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62034548	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72805944	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8043851	0.87[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
6	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1067216	chr16:82719694-82821762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv543000	chr16:82719694-82821762	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1066132	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv543001	chr16:82769526-82847359	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1063617	chr16:82786803-83229529	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1063412	chr16:82806653-82826507	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82804400-82816600	Weak transcription	Brain Hippocampus Middle	brain
2	chr16:82805600-82821600	Weak transcription	NHEK	skin
3	chr16:82806800-82816200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:82807200-82817800	Weak transcription	HMEC	breast
5	chr16:82808000-82824800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:82810600-82834800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr16:82810800-82821400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr16:82811200-82817000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:82811600-82816600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr16:82812000-82821600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:82812400-82816400	Weak transcription	Fetal Intestine Large	intestine
12	chr16:82812800-82815800	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr16:82812800-82816800	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr16:82812800-82817200	Enhancers	Psoas Muscle	Psoas
15	chr16:82813000-82817400	Enhancers	Right Ventricle	heart
16	chr16:82813800-82819600	Enhancers	Fetal Muscle Leg	muscle
17	chr16:82814200-82816200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr16:82814400-82816400	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr16:82814400-82819800	Enhancers	Primary B cells from peripheral blood	blood
20	chr16:82814600-82817000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr16:82814800-82817000	Enhancers	Aorta	Aorta
22	chr16:82815000-82815800	Enhancers	Adipose Nuclei	Adipose
23	chr16:82815000-82816000	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr16:82815000-82816000	Enhancers	Colonic Mucosa	Colon
25	chr16:82815000-82816400	Weak transcription	Fetal Heart	heart
26	chr16:82815000-82817200	Enhancers	Colon Smooth Muscle	Colon
27	chr16:82815200-82815800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr16:82815200-82815800	Enhancers	HUVEC	blood vessel
29	chr16:82815200-82816000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:82815200-82816000	Enhancers	Primary B cells from cord blood	blood
31	chr16:82815200-82816000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr16:82815200-82816400	Weak transcription	Spleen	Spleen
33	chr16:82815200-82816600	Enhancers	Duodenum Mucosa	Duodenum
34	chr16:82815200-82817400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr16:82815400-82815800	Enhancers	H9 Cell Line	embryonic stem cell
36	chr16:82815400-82815800	Enhancers	iPS-15b Cell Line	embryonic stem cell
37	chr16:82815400-82816000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr16:82815400-82816000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr16:82815400-82816600	Enhancers	iPS-20b Cell Line	embryonic stem cell
40	chr16:82815400-82817400	Enhancers	Fetal Intestine Small	intestine
41	chr16:82815600-82816000	Weak transcription	HSMMtube	muscle
42	chr16:82815600-82816800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr16:82815600-82816800	Enhancers	Rectal Mucosa Donor 29	rectum
44	chr16:82815600-82817000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr16:82815600-82817200	Enhancers	H1 Cell Line	embryonic stem cell
46	chr16:82815600-82817200	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr16:82815600-82817200	Enhancers	Left Ventricle	heart
48	chr16:82815600-82817200	Enhancers	Right Atrium	heart
49	chr16:82815600-82817200	Enhancers	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links