Variant report

Variant	rs17195384
Chromosome Location	chr4:172090407-172090408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AADAT-12	chr4:172090360-172091093	NONHSAT099198

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10003589	0.87[EUR][1000 genomes]
rs10016739	0.87[EUR][1000 genomes]
rs10024424	0.87[EUR][1000 genomes]
rs10026424	0.87[EUR][1000 genomes]
rs10028706	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10084957	0.88[EUR][1000 genomes]
rs1038813	0.90[EUR][1000 genomes]
rs11722373	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111056	0.86[EUR][1000 genomes]
rs13120288	0.86[EUR][1000 genomes]
rs13133591	0.82[EUR][1000 genomes]
rs1491336	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1491337	0.87[EUR][1000 genomes]
rs1491338	0.87[EUR][1000 genomes]
rs1491339	0.87[EUR][1000 genomes]
rs1491340	0.87[EUR][1000 genomes]
rs1491341	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1491342	0.87[EUR][1000 genomes]
rs1491345	0.87[EUR][1000 genomes]
rs17195349	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1907495	0.87[EUR][1000 genomes]
rs1907496	0.86[EUR][1000 genomes]
rs2035825	0.87[EUR][1000 genomes]
rs2130915	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2130916	0.87[EUR][1000 genomes]
rs2172147	0.87[EUR][1000 genomes]
rs4413369	0.87[EUR][1000 genomes]
rs4692874	0.87[EUR][1000 genomes]
rs6811352	0.86[EUR][1000 genomes]
rs6836611	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6841957	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710141	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72710147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710158	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72710159	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654686	0.90[EUR][1000 genomes]
rs7657554	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7660351	0.87[EUR][1000 genomes]
rs7660725	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7665382	0.90[EUR][1000 genomes]
rs7667994	0.87[EUR][1000 genomes]
rs7669971	0.87[EUR][1000 genomes]
rs7670769	0.87[EUR][1000 genomes]
rs7675758	0.87[EUR][1000 genomes]
rs7676981	0.87[EUR][1000 genomes]
rs7690912	0.90[EUR][1000 genomes]
rs7695786	0.87[EUR][1000 genomes]
rs9312499	0.87[EUR][1000 genomes]
rs958355	0.90[EUR][1000 genomes]
rs958357	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020886	chr4:171993828-172140098	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
8	nsv461837	chr4:172089287-172147897	Enhancers Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv596170	chr4:172089287-172147897	Enhancers Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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