Variant report

Variant	rs1907496
Chromosome Location	chr4:172160790-172160791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10003589	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10016739	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10024424	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10026424	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1038813	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13111056	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116202	0.81[EUR][1000 genomes]
rs13120288	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13133591	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1491336	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491337	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491338	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491339	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491340	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491341	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491342	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1491345	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17195349	0.86[EUR][1000 genomes]
rs17195384	0.86[EUR][1000 genomes]
rs1907495	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2035825	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2130915	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2130916	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2172147	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4413369	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4692874	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6811352	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6821788	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6821806	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6836611	0.86[EUR][1000 genomes]
rs6839895	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6841957	0.86[EUR][1000 genomes]
rs6845437	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72710141	0.86[EUR][1000 genomes]
rs72710147	0.86[EUR][1000 genomes]
rs72710158	0.85[EUR][1000 genomes]
rs72710159	0.86[EUR][1000 genomes]
rs7654686	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7657554	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7660351	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7660725	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7665382	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7667994	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7669971	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7670769	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7675758	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7676981	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7690912	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7695786	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9312499	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs958355	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs958357	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv461836	chr4:171963233-172494233	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv596169	chr4:171963233-172494233	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1016836	chr4:171982072-172496279	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
6	nsv537355	chr4:171982072-172496279	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172155400-172160800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr4:172160000-172164000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:172160400-172164200	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links