Variant report

Variant	rs17196097
Chromosome Location	chr3:135607907-135607908
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11916990	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1401543	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1519261	0.81[EUR][1000 genomes]
rs17195888	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17196014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17249203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1878993	1.00[ASN][1000 genomes]
rs2176666	1.00[ASN][1000 genomes]
rs2895793	1.00[ASN][1000 genomes]
rs34629706	1.00[ASN][1000 genomes]
rs56382648	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56818259	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57895104	1.00[ASN][1000 genomes]
rs60349283	1.00[ASN][1000 genomes]
rs60545022	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61789012	1.00[ASN][1000 genomes]
rs61789017	1.00[ASN][1000 genomes]
rs61789025	1.00[ASN][1000 genomes]
rs61789026	1.00[ASN][1000 genomes]
rs61790390	1.00[ASN][1000 genomes]
rs61790396	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790400	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790401	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790403	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790404	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61790459	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61791710	1.00[ASN][1000 genomes]
rs6414336	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762218	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6765327	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769033	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769893	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6786217	1.00[ASN][1000 genomes]
rs6802942	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs72977660	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863014	1.00[ASN][1000 genomes]
rs73863035	1.00[ASN][1000 genomes]
rs7618257	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7635010	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs908827	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs980210	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865234	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv829732	chr3:135561706-135756840	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17196097	SLCO2A1	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135606600-135609800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:135606800-135610000	Weak transcription	HMEC	breast
3	chr3:135607400-135609000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:135607600-135608400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:135607600-135608800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:135607600-135609200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr3:135607800-135608000	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:135607800-135609400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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