Variant report

Variant	rs17197014
Chromosome Location	chr6:69408781-69408782
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17197964	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17255959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17258703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745852	0.80[AMR][1000 genomes]
rs9454591	0.86[EUR][1000 genomes]
rs9454592	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69406000-69417800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69406000-69419600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69407400-69413800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69407400-69413800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69407600-69411000	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69407600-69417600	Weak transcription	Brain Hippocampus Middle	brain
8	chr6:69407600-69417800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:69407800-69411200	Weak transcription	Brain Substantia Nigra	brain
10	chr6:69408400-69409800	Enhancers	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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