Variant report

Variant	rs17197964
Chromosome Location	chr6:69455884-69455885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17197014	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17255959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17258703	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61976953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73745852	0.80[AMR][1000 genomes]
rs9454591	0.86[EUR][1000 genomes]
rs9454592	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
4	chr6:69452600-69456800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69452600-69457200	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69452600-69464800	Weak transcription	Fetal Lung	lung
7	chr6:69453600-69456800	Weak transcription	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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