Variant report

Variant	rs17198079
Chromosome Location	chr8:103927883-103927884
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103884385..103886058-chr8:103926996..103929208,2	MCF-7	breast:
2	chr8:103926652..103929593-chr8:103930931..103933539,2	K562	blood:

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs12544232	0.82[AMR][1000 genomes]
rs12546479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546636	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548745	1.00[CHB][hapmap]
rs12549011	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549073	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549462	0.81[AMR][1000 genomes]
rs12550185	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533182	1.00[CHB][hapmap]
rs17197341	0.85[AMR][1000 genomes]
rs17197736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137339	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388369	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388370	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734673	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734676	0.88[AMR][1000 genomes]
rs4734678	0.88[AMR][1000 genomes]
rs4734680	1.00[CHB][hapmap]
rs62522573	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62522576	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522615	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522616	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522617	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522618	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522619	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522620	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522621	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522622	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522623	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522624	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522626	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526529	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526533	0.88[AMR][1000 genomes]
rs62526534	0.88[AMR][1000 genomes]
rs6999525	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103913400-103929800	Weak transcription	Psoas Muscle	Psoas
2	chr8:103922200-103929600	Weak transcription	Fetal Intestine Small	intestine
3	chr8:103922800-103929800	Weak transcription	Fetal Brain Male	brain
4	chr8:103922800-103930600	Weak transcription	Ovary	ovary
5	chr8:103923000-103929400	Weak transcription	Left Ventricle	heart
6	chr8:103923000-103929600	Weak transcription	Placenta	Placenta
7	chr8:103923000-103931000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:103923000-103931000	Weak transcription	Brain Substantia Nigra	brain
9	chr8:103923000-103931600	Weak transcription	Fetal Stomach	stomach
10	chr8:103923000-103932000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:103923200-103929800	Weak transcription	Brain Anterior Caudate	brain
12	chr8:103923200-103931000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr8:103923200-103935800	Weak transcription	Fetal Lung	lung
14	chr8:103923400-103931200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr8:103923400-103932000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:103923600-103928800	Weak transcription	A549	lung
17	chr8:103923600-103929200	Weak transcription	Fetal Heart	heart
18	chr8:103923600-103931200	Weak transcription	HMEC	breast
19	chr8:103923600-103931600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr8:103926000-103931800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:103926000-103932000	Weak transcription	Small Intestine	intestine
22	chr8:103926000-103932600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:103926200-103929600	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:103926200-103930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:103926200-103931000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr8:103926400-103930000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr8:103926400-103931000	Weak transcription	Aorta	Aorta
28	chr8:103926400-103931400	Weak transcription	Right Ventricle	heart
29	chr8:103926400-103932600	Weak transcription	Fetal Muscle Leg	muscle
30	chr8:103926400-103937400	Weak transcription	Lung	lung
31	chr8:103926600-103928800	Weak transcription	Adipose Nuclei	Adipose
32	chr8:103926600-103929800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:103926600-103931000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr8:103926600-103931000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:103926600-103936600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr8:103926800-103931000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:103926800-103931200	Weak transcription	Osteobl	bone
38	chr8:103926800-103931800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr8:103926800-103932600	Weak transcription	NHDF-Ad	bronchial
40	chr8:103927000-103931800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:103927200-103931000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr8:103927200-103931000	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:103927800-103929400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:103927800-103929400	Weak transcription	Pancreas	Pancrea
45	chr8:103927800-103930200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr8:103927800-103930600	Weak transcription	Right Atrium	heart
47	chr8:103927800-103939800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr8:103927800-103941600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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