Variant report

Variant	rs17775390
Chromosome Location	chr8:103826426-103826427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:103541696..103544133-chr8:103825198..103827958,2	MCF-7	breast:
2	chr8:102462115..102464304-chr8:103824112..103827007,2	K562	blood:
3	chr8:103826343..103827971-chr8:103875378..103877956,2	MCF-7	breast:
4	chr8:103657627..103672045-chr8:103815832..103826635,94	K562	blood:
5	chr8:103663684..103664744-chr8:103826225..103827430,7	K562	blood:
6	chr8:103659827..103671648-chr8:103816894..103829599,93	K562	blood:
7	chr8:103826311..103829977-chr8:103833527..103835576,3	MCF-7	breast:
8	chr8:103644446..103678119-chr8:103815618..103829807,419	MCF-7	breast:
9	chr8:103023024..103025926-chr8:103825006..103827127,2	K562	blood:
10	chr8:103251231..103253314-chr8:103826347..103828464,2	MCF-7	breast:
11	chr8:103653489..103674518-chr8:103809987..103832119,275	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000155096	Chromatin interaction
ENSG00000155090	Chromatin interaction
ENSG00000048392	Chromatin interaction
ENSG00000253320	Chromatin interaction
ENSG00000246263	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1019975	0.89[AMR][1000 genomes]
rs12546193	0.89[AMR][1000 genomes]
rs12546479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546634	0.88[AMR][1000 genomes]
rs12546636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12546960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547200	0.89[AMR][1000 genomes]
rs12547652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12548745	1.00[CHB][hapmap]
rs12548786	0.89[AMR][1000 genomes]
rs12549011	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12549073	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12550185	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13123	0.89[AMR][1000 genomes]
rs1533182	1.00[CHB][hapmap]
rs17197736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17198079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17775450	0.89[AMR][1000 genomes]
rs17775510	0.89[AMR][1000 genomes]
rs2137339	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304348	0.89[AMR][1000 genomes]
rs2304349	0.89[AMR][1000 genomes]
rs2388369	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2388370	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734670	0.89[AMR][1000 genomes]
rs4734672	0.89[AMR][1000 genomes]
rs4734673	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734674	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734680	1.00[CHB][hapmap]
rs62522573	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62522574	0.89[AMR][1000 genomes]
rs62522576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522599	0.89[AMR][1000 genomes]
rs62522602	0.89[AMR][1000 genomes]
rs62522603	0.89[AMR][1000 genomes]
rs62522615	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522616	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522617	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522618	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522619	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522620	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522621	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522622	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522623	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522624	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62522626	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62526529	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6999267	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1021898	chr8:103767324-103922482	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv465751	chr8:103817106-103894326	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
4	nsv611822	chr8:103817106-103894326	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103822800-103837400	Weak transcription	Gastric	stomach
2	chr8:103823000-103826600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr8:103823000-103826600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr8:103823000-103826600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr8:103823000-103826800	Weak transcription	Left Ventricle	heart
6	chr8:103823000-103831600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:103823000-103835600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr8:103823000-103835600	Weak transcription	Adipose Nuclei	Adipose
9	chr8:103823000-103837200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr8:103823000-103839600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr8:103823000-103841400	Weak transcription	Pancreas	Pancrea
12	chr8:103823000-103855000	Weak transcription	Esophagus	oesophagus
13	chr8:103823200-103841800	Weak transcription	Aorta	Aorta
14	chr8:103823200-103844000	Weak transcription	Right Ventricle	heart
15	chr8:103823200-103853400	Weak transcription	Right Atrium	heart
16	chr8:103823400-103870600	Weak transcription	Stomach Mucosa	stomach
17	chr8:103823600-103826800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr8:103823600-103826800	Weak transcription	Brain Anterior Caudate	brain
19	chr8:103823600-103826800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr8:103823600-103826800	Weak transcription	Fetal Kidney	kidney
21	chr8:103823600-103826800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr8:103823600-103827000	Enhancers	Hela-S3	cervix
23	chr8:103823600-103827200	Enhancers	Fetal Thymus	thymus
24	chr8:103823600-103827800	Enhancers	Duodenum Mucosa	Duodenum
25	chr8:103823600-103834800	Weak transcription	Fetal Brain Female	brain
26	chr8:103823600-103837400	Weak transcription	Brain Hippocampus Middle	brain
27	chr8:103823600-103838800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:103823600-103839800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr8:103823600-103840000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr8:103823800-103826600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr8:103823800-103826600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:103823800-103826600	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr8:103823800-103826600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr8:103823800-103826600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:103823800-103826600	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:103823800-103826600	Weak transcription	Fetal Brain Male	brain
37	chr8:103823800-103826600	Weak transcription	Fetal Stomach	stomach
38	chr8:103823800-103826800	Weak transcription	Primary B cells from cord blood	blood
39	chr8:103823800-103826800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:103823800-103826800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr8:103823800-103826800	Weak transcription	Brain Angular Gyrus	brain
42	chr8:103823800-103826800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:103823800-103831600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr8:103823800-103837600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr8:103823800-103837800	Weak transcription	NHDF-Ad	bronchial
46	chr8:103824000-103826600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr8:103824000-103826600	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr8:103824000-103826600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr8:103824000-103826600	Weak transcription	Fetal Lung	lung
50	chr8:103824000-103826600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links